View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5584_high_45 (Length: 238)

Name: NF5584_high_45
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5584_high_45
NF5584_high_45
[»] chr7 (4 HSPs)
chr7 (10-123)||(21971751-21971862)
chr7 (62-238)||(31166626-31166802)
chr7 (62-123)||(27596547-27596608)
chr7 (176-234)||(21971919-21971977)
[»] chr8 (2 HSPs)
chr8 (10-238)||(26759420-26759646)
chr8 (62-97)||(146894-146929)
[»] chr2 (3 HSPs)
chr2 (62-238)||(39864971-39865147)
chr2 (176-236)||(4329966-4330026)
chr2 (80-123)||(29771039-29771082)
[»] chr3 (2 HSPs)
chr3 (66-157)||(39737482-39737573)
chr3 (66-123)||(23566677-23566734)
[»] chr4 (3 HSPs)
chr4 (62-123)||(918825-918886)
chr4 (66-123)||(28104067-28104124)
chr4 (67-123)||(12639507-12639563)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 21971751 - 21971862
Alignment:
Q  10 catcatcagtactatattctattttgcagttatcattcaannnnnnnnnnnnacgctatttcttttatacgctcaatttattggaagtttgaatttatta 109  Q
    ||||||||||| ||||||||||| ||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21971751 catcatcagtattatattctattctgcagttatcattcaatttttttttt--acgctatttcttttatacgctcaatttattggaagtttgaatttatta 21971848  T
Q  110 agtattattcaaac 123  Q
    ||||||||||||||    
T  21971849 agtattattcaaac 21971862  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 31166802 - 31166626
Alignment:
Q  62 acgctatttcttttatacgctcaatttattggaagtttgaatttattaagtattattcaaacnnnnnnnnncttgtttttatatgttattgattt-agat 160  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||| |||||||||||||         |||||||||||||||||||| ||| | ||    
T  31166802 acgctatttcttttatacgctcaatttattggaattccgaatttattaggtattattcaaac-ttttttttcttgtttttatatgttattgttttaacat 31166704  T
Q  161 cacgtnnnnnnnnnntcccttgagtaaaatttgcaggnnnnnnnttattaagaaatgaaggctggatataatgggaat 238  Q
    |||||          ||||||||||||| ||||||||       ||||||||||||||||| ||||||||||||||||    
T  31166703 cacgtaaaaaaaaaatcccttgagtaaagtttgcaggaaaaaaattattaagaaatgaaggttggatataatgggaat 31166626  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 27596547 - 27596608
Alignment:
Q  62 acgctatttcttttatacgctcaatttattggaagtttgaatttattaagtattattcaaac 123  Q
    |||||||||||||||| |||||||||||||||||||   ||||||||| |||||||||||||    
T  27596547 acgctatttcttttattcgctcaatttattggaagtcccaatttattaggtattattcaaac 27596608  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 21971919 - 21971977
Alignment:
Q  176 tcccttgagtaaaatttgcaggnnnnnnnttattaagaaatgaaggctggatataatgg 234  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  21971919 tcccttgagtaaaatttgcaggaaaaaaagtattaagaaatgaaggctggatataatgg 21971977  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 26759420 - 26759646
Alignment:
Q  10 catcatcagtactatattctattttgcagttatcattcaannnnnnnnnnnnacgctatttcttttatacgctcaatttattggaagtttgaatttatta 109  Q
    ||||||||||||||||||||||| ||||||||| ||||||            ||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  26759420 catcatcagtactatattctattctgcagttattattcaatttttttt----acgctatttcttttatatgctcaatttattggaagtccgaatttatta 26759515  T
Q  110 agtattattcaaacnnnnnnnnncttgtttttatatgttattgattt-agatcacgt-nnnnnnnnnntcccttgagtaaaatttgcaggnnnnnnntta 207  Q
     |||||||||||||         |||||||||||||||||||| ||| | |||||||           ||||||||||||| ||||||||       |||    
T  26759516 ggtattattcaaactttttttctcttgtttttatatgttattgttttaacatcacgtaaaaaaaaaaatcccttgagtaaagtttgcaggaaaaaaatta 26759615  T
Q  208 ttaagaaatgaaggctggatataatgggaat 238  Q
    |||||||||||||||||||||||||||||||    
T  26759616 ttaagaaatgaaggctggatataatgggaat 26759646  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 97
Target Start/End: Original strand, 146894 - 146929
Alignment:
Q  62 acgctatttcttttatacgctcaatttattggaagt 97  Q
    ||||||||||||| ||||||||||||||||||||||    
T  146894 acgctatttctttcatacgctcaatttattggaagt 146929  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 39865147 - 39864971
Alignment:
Q  62 acgctatttcttttatacgctcaatttattggaagtttgaatttattaagtattattcaaacnnnnnnnnncttgtttttatatgttattgattt-agat 160  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||| |||||||||||||         |||||||||||||||||||| ||| | ||    
T  39865147 acgctatttcttttatacgctcaatttattggaattccgaatttattaggtattattcaaac-ttttttttcttgtttttatatgttattgttttaacat 39865049  T
Q  161 cacgtnnnnnnnnnntcccttgagtaaaatttgcaggnnnnnnnttattaagaaatgaaggctggatataatgggaat 238  Q
    |||||          ||||||||||||| ||||||||       ||||||||||||||||| ||||||||||||||||    
T  39865048 cacgtaaaaaaaaaatcccttgagtaaagtttgcaggaaaaaaattattaagaaatgaaggttggatataatgggaat 39864971  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 4329966 - 4330026
Alignment:
Q  176 tcccttgagtaaaatttgcaggnnnnnnnttattaagaaatgaaggctggatataatggga 236  Q
    ||||||||||||||||||||||       |||||||||||||||||||| |||||||||||    
T  4329966 tcccttgagtaaaatttgcaggaaaaaaattattaagaaatgaaggctgaatataatggga 4330026  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 29771039 - 29771082
Alignment:
Q  80 gctcaatttattggaagtttgaatttattaagtattattcaaac 123  Q
    ||||||||||||||||||  |||||||||| |||||||||||||    
T  29771039 gctcaatttattggaagtccgaatttattaggtattattcaaac 29771082  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 39737573 - 39737482
Alignment:
Q  66 tatttcttttatacgctcaatttattggaagtttgaatttattaagtattattcaaacnnnnnnnnncttgtttttatatgttattgattta 157  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||         |||||||||||||||||||| ||||    
T  39737573 tatttcttttatacgctcaatttattggaagtccgaatttattaggtattattcaaactttttttttcttgtttttatatgttattgtttta 39737482  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 23566734 - 23566677
Alignment:
Q  66 tatttcttttatacgctcaatttattggaagtttgaatttattaagtattattcaaac 123  Q
    |||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  23566734 tatttcttttatacgctcaatttattggaattctgaatttattaggtattattcaaac 23566677  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 918825 - 918886
Alignment:
Q  62 acgctatttcttttatacgctcaatttattggaagtttgaatttattaagtattattcaaac 123  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||| |||||| ||||||    
T  918825 acgctatttcttttatacgctcaatttattggaagtccaaatttattacgtattagtcaaac 918886  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 28104067 - 28104124
Alignment:
Q  66 tatttcttttatacgctcaatttattggaagtttgaatttattaagtattattcaaac 123  Q
    ||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||    
T  28104067 tatttcttttatacgctcaatttattggaagtcccaatttattaggtattattcaaac 28104124  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 12639563 - 12639507
Alignment:
Q  67 atttcttttatacgctcaatttattggaagtttgaatttattaagtattattcaaac 123  Q
    |||||||||||||||||||||||||||||||   || |||||| |||||||||||||    
T  12639563 atttcttttatacgctcaatttattggaagtcccaacttattaggtattattcaaac 12639507  T

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