View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5584_high_5 (Length: 569)

Name: NF5584_high_5
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5584_high_5
NF5584_high_5
[»] chr2 (8 HSPs)
chr2 (6-551)||(7156181-7156737)
chr2 (136-194)||(7174503-7174561)
chr2 (15-64)||(7160752-7160801)
chr2 (15-59)||(6538843-6538887)
chr2 (6-64)||(7199967-7200025)
chr2 (150-195)||(7160901-7160946)
chr2 (15-64)||(7168688-7168737)
chr2 (6-62)||(7174362-7174418)
[»] chr6 (2 HSPs)
chr6 (135-196)||(9825635-9825696)
chr6 (135-196)||(9819955-9820016)
[»] chr3 (3 HSPs)
chr3 (15-64)||(2442043-2442092)
chr3 (15-64)||(4142132-4142181)
chr3 (15-64)||(4157942-4157991)
[»] chr5 (1 HSPs)
chr5 (16-64)||(11081817-11081865)


Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 6 - 551
Target Start/End: Original strand, 7156181 - 7156737
Alignment:
Q  6 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagcca-----------aagtatcaccatgacaaagtatgcacaaacaa 94  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||           ||||||||||||||||||||||||||||||||    
T  7156181 aggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatctgccaaagtatcaccatgacaaagtatgcacaaacaa 7156280  T
Q  95 tccatcatcacatttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7156281 tccatcatcacatttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 7156380  T
Q  195 tgcttcgtgtataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttcctgttccggtattaggaaaacgataagggaaatg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7156381 tgcttcgtgtataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttcctgttccggtattaggaaaacgataagggaaatg 7156480  T
Q  295 ggtttgaatccttctccaataatcggtacccatggtgtgaacatttacttgagttttcatagccctattaccattaataagagattcataccaagaaacc 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7156481 ggtttgaatccttctccaataatcggtacccatggtgtgaacatttacttgagttttcatagccctattaccattaataagagattcataccaagaaact 7156580  T
Q  395 gcgaccaccttgtaagtatcactggaatgatcatatccaaagccatacattgtgaaataactaggcattcgagttggaggaacttctagatagggcgact 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7156581 gcgaccaccttgtaagtatcactggaatgatcatatccaaagccatacattgtgaaataactaggcgttcgagttggaggaacttctagatagggcgact 7156680  T
Q  495 ttgtaaatttgctaatggaagggttccacaaatttgatcgagtgcggaacagagaat 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7156681 ttgtaaatttgctaatggaagggttccacaaatttgatcgagtgcgaaacagagaat 7156737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 7174503 - 7174561
Alignment:
Q  136 tccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 194  Q
    |||||||||||||||||||||||||| | |||||||  ||||||||| || ||||||||    
T  7174503 tccataatcaggctgcaatatctctccataagactcattctccaaatgaagagaaacaa 7174561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  15 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 64  Q
    ||||||||||| ||||||||| | ||||| ||||||||||||||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 6538887 - 6538843
Alignment:
Q  15 gaacaatttagcccaagaatcttcatttcgatactccttcataag 59  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||    
T  6538887 gaacaatttagtccaagaatctttatttccatactccttcataag 6538843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 7199967 - 7200025
Alignment:
Q  6 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 64  Q
    |||| ||| ||||||| |||||||||||| |||||||| | |||||||||||| |||||    
T  7199967 aggaacacggaacaatctagcccaagaattttcatttccaaactccttcataacccaaa 7200025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 7160901 - 7160946
Alignment:
Q  150 gcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaat 195  Q
    |||||| ||||||| |||||||| |||||||||||| |||||||||    
T  7160901 gcaatagctctcgataagactccttctccaaatcaagagaaacaat 7160946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  15 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 64  Q
    ||||||||||| ||||||||| | ||||| ||| ||||||||||||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 7174362 - 7174418
Alignment:
Q  6 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagcca 62  Q
    |||| ||| ||||||| ||| ||||||||||| ||||| ||| ||||||||||||||    
T  7174362 aggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagcca 7174418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 9825635 - 9825696
Alignment:
Q  135 ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg 196  Q
    ||||||||||||||||||| |||||| || | ||||| ||| ||||||||| ||||||||||    
T  9825635 ctccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatg 9825696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 9819955 - 9820016
Alignment:
Q  135 ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg 196  Q
    ||||||||||||||||||| |||||| || | |||||  || ||||||||| ||||||||||    
T  9819955 ctccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatg 9820016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 2442092 - 2442043
Alignment:
Q  15 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 64  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  2442092 gaacaatttagtccaagaatctttatttccatactccttcataatccaaa 2442043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 4142132 - 4142181
Alignment:
Q  15 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 64  Q
    ||||||||||| |||||| |||| ||||| ||| ||||||||||||||||    
T  4142132 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 4157942 - 4157991
Alignment:
Q  15 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 64  Q
    ||||||||||| |||||| |||| ||||| ||| ||||||||||||||||    
T  4157942 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  16 aacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 64  Q
    |||||||||| |||||| |||| ||||| |||||||||||||| |||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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