View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5584_low_1 (Length: 783)

Name: NF5584_low_1
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5584_low_1
NF5584_low_1
[»] chr8 (3 HSPs)
chr8 (378-783)||(35613240-35613645)
chr8 (113-188)||(11860573-11860648)
chr8 (88-153)||(19710990-19711055)
[»] chr5 (12 HSPs)
chr5 (378-783)||(29292541-29292946)
chr5 (378-783)||(39085514-39085919)
chr5 (605-783)||(6292500-6292678)
chr5 (127-188)||(25409774-25409835)
chr5 (128-189)||(26504421-26504482)
chr5 (108-189)||(29254498-29254579)
chr5 (82-144)||(30741444-30741505)
chr5 (428-481)||(33646324-33646377)
chr5 (78-184)||(26349617-26349723)
chr5 (123-189)||(32581187-32581253)
chr5 (78-143)||(26342912-26342977)
chr5 (108-189)||(26458019-26458100)
[»] chr2 (2 HSPs)
chr2 (378-783)||(24466929-24467334)
chr2 (378-783)||(4017161-4017566)
[»] chr6 (3 HSPs)
chr6 (468-783)||(18769766-18770082)
chr6 (16-198)||(3067142-3067320)
chr6 (264-370)||(3066972-3067077)
[»] chr1 (8 HSPs)
chr1 (108-175)||(17374374-17374441)
chr1 (117-175)||(17382233-17382291)
chr1 (99-183)||(1950105-1950189)
chr1 (115-184)||(1969859-1969928)
chr1 (108-153)||(17326642-17326687)
chr1 (97-160)||(1939374-1939437)
chr1 (108-175)||(17365996-17366063)
chr1 (109-158)||(17356840-17356889)
[»] scaffold0107 (1 HSPs)
scaffold0107 (101-188)||(33824-33911)
[»] chr3 (3 HSPs)
chr3 (83-187)||(29651229-29651334)
chr3 (110-178)||(17224909-17224977)
chr3 (112-184)||(4667723-4667795)
[»] scaffold1149 (1 HSPs)
scaffold1149 (96-188)||(1207-1299)
[»] chr7 (6 HSPs)
chr7 (101-188)||(12731680-12731767)
chr7 (108-153)||(15985940-15985985)
chr7 (522-711)||(42560902-42561091)
chr7 (102-184)||(10258436-10258518)
chr7 (116-153)||(11224041-11224078)
chr7 (127-188)||(41619880-41619941)
[»] chr4 (6 HSPs)
chr4 (132-185)||(9246232-9246285)
chr4 (96-188)||(16235459-16235551)
chr4 (127-185)||(9183992-9184050)
chr4 (119-181)||(9245080-9245142)
chr4 (127-185)||(9276644-9276702)
chr4 (127-185)||(9287524-9287582)
[»] scaffold1826 (1 HSPs)
scaffold1826 (123-185)||(322-384)
[»] scaffold0386 (1 HSPs)
scaffold0386 (123-184)||(13314-13375)


Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 378 - 783
Target Start/End: Original strand, 35613240 - 35613645
Alignment:
Q  378 ggacagcaggtacataacacggttctgtggataaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcag 477  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35613240 ggacagcaggtacataacacggttctgtggacaaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaacaacaactcagtggcag 35613339  T
Q  478 gttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatgggg 577  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35613340 gctacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgccagtcgaagctgaagcatgggg 35613439  T
Q  578 tcttctagaggctattaaatttgttgttgctaaagacatgtcccatgtgatctttgagtctgattgcaaggtcattgttgacattgtaaactcctcttat 677  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||    
T  35613440 tcttctagaggctattaaatttgttgttgctaacgacatgtcccatgtgatctttgagtctgactgcaaggccattgttgacattgtaaactcctctcat 35613539  T
Q  678 ttgccacaaaacgagctgggagacattctatctacttgtaaggacttattatccattcatgctagttttattgtgaactttgttaggaggcaagcaaatg 777  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35613540 ttcccacaaaacgagctgggagacattctatctacttgtaaggacttattatccattcatgctagctttattgtgaactttgttaggaggcaagcaaatg 35613639  T
Q  778 aggttg 783  Q
    ||||||    
T  35613640 aggttg 35613645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 11860648 - 11860573
Alignment:
Q  113 ctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 188  Q
    |||||||||||||||| ||||| |||||||| || |||||| |||||| | ||||| |||||| ||||||| ||||    
T  11860648 ctaaaattaaaatcatcattaattgtctcttcagcacatcaatgtgttgtgtttgttcctttagcacactttgtaa 11860573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 19710990 - 19711055
Alignment:
Q  88 cttatgtagttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatca 153  Q
    |||||| ||||| ||||||  |||| ||||||  |||| |||||||||||||||||||||||||||    
T  19710990 cttatggagttgcaaaaaaaacttcttaaaatagaaattattattaaatgtctcttaagtacatca 19711055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 378 - 783
Target Start/End: Original strand, 29292541 - 29292946
Alignment:
Q  378 ggacagcaggtacataacacggttctgtggataaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcag 477  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29292541 ggacagcaggtacataacacggttctgtggacaaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaacaacaactcagtggcag 29292640  T
Q  478 gttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatgggg 577  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29292641 gctacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgccagtcgaagctgaagcatgggg 29292740  T
Q  578 tcttctagaggctattaaatttgttgttgctaaagacatgtcccatgtgatctttgagtctgattgcaaggtcattgttgacattgtaaactcctcttat 677  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||    
T  29292741 tcttctagaggctattaaatttgttgttgctaacgacatgtcccatgtgatctttgagtctgactgcaaggccattgttgacattgtaaactcctctcat 29292840  T
Q  678 ttgccacaaaacgagctgggagacattctatctacttgtaaggacttattatccattcatgctagttttattgtgaactttgttaggaggcaagcaaatg 777  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29292841 ttcccacaaaacgagctgggagacattctatctacttgtaaggacttattatccattcatgctagctttattgtgaactttgttaggaggcaagcaaatg 29292940  T
Q  778 aggttg 783  Q
    ||||||    
T  29292941 aggttg 29292946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 378 - 783
Target Start/End: Original strand, 39085514 - 39085919
Alignment:
Q  378 ggacagcaggtacataacacggttctgtggataaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcag 477  Q
    ||||| |||||||||| ||| |||||||||| |||||   | |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  39085514 ggacaacaggtacatagcacagttctgtggacaaagctgtcacctccattcttgaattgcaatgtcgattgtgcactattcaacaacaactcagtggcag 39085613  T
Q  478 gttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatgggg 577  Q
    | ||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39085614 gctacaggttgtgcatccgtaactcaaaaggccaatttatagccgatatgtcaaacttttcacactgctccctcatgcatgtcgaagctgaagcatgggg 39085713  T
Q  578 tcttctagaggctattaaatttgttgttgctaaagacatgtcccatgtgatctttgagtctgattgcaaggtcattgttgacattgtaaactcctcttat 677  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||| | |||||||||||||| |||||||||| ||    
T  39085714 tcttctagaggctattaaatttgctgttgctaaagacatgtcctatgtgatctttgagtctaactgcaaagccattgttgacattgcaaactcctctcat 39085813  T
Q  678 ttgccacaaaacgagctgggagacattctatctacttgtaaggacttattatccattcatgctagttttattgtgaactttgttaggaggcaagcaaatg 777  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  39085814 ttgccacaaaatgagctaggagacattctatctacttgtaaggatttattgtccattcatactagttttattgtgaactttgttaggaggcaaggaaatg 39085913  T
Q  778 aggttg 783  Q
    ||||||    
T  39085914 aggttg 39085919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 605 - 783
Target Start/End: Complemental strand, 6292678 - 6292500
Alignment:
Q  605 tgctaaagacatgtcccatgtgatctttgagtctgattgcaaggtcattgttgacattgtaaactcctcttatttgccacaaaacgagctgggagacatt 704  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6292678 tgctaacgacatgtcccatgtgatctttgagtctgactgcaaggccattgttgacattgtaaactcctctcatttgccacaaaacgagctgggagacatt 6292579  T
Q  705 ctatctacttgtaaggacttattatccattcatgctagttttattgtgaactttgttaggaggcaagcaaatgaggttg 783  Q
    ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6292578 ctacctacttgtaaggacttattatccattcatgctagctttattgtgaactttgttaggaggcaagcaaatgaggttg 6292500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 25409835 - 25409774
Alignment:
Q  127 attattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 188  Q
    ||||||||||||||||||||||||||| || ||| | |||||| |||||||||| |||||||    
T  25409835 attattaaatgtctcttaagtacatcaatgggttgtatttgtctctttaacacaattagtaa 25409774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 26504482 - 26504421
Alignment:
Q  128 ttattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaag 189  Q
    ||||||||||||||||| ||| |||||| |||| | ||||||| ||||||||||||||||||    
T  26504482 ttattaaatgtctcttaggtaaatcattttgttatgtttgtccatttaacacacttagtaag 26504421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 29254579 - 29254498
Alignment:
Q  108 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaag 189  Q
    ||||| ||| |||||| |||||||||||||||||||||| |  ||| |||||| | ||||||| ||||||||||||| ||||    
T  29254579 ccttcataacattaaagtcattattaaatgtctcttaagcaagtcaatgtgttatgtttgtccatttaacacacttaataag 29254498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 30741444 - 30741505
Alignment:
Q  82 atagtacttatgtagttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctctta 144  Q
    |||| ||||||| ||||| | |||||||||| ||||||||||||||||||||||| |||||||    
T  30741444 atagcacttatgaagttg-agaaaatccttcataaaattaaaatcattattaaatatctctta 30741505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 481
Target Start/End: Complemental strand, 33646377 - 33646324
Alignment:
Q  428 cttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcaggtta 481  Q
    ||||||||||||||| ||||||||| | ||||| ||||||||||| ||||||||    
T  33646377 cttgaaatgcaatgtagattgtgcgttgttcaacaacaactcagtagcaggtta 33646324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 26349723 - 26349617
Alignment:
Q  78 atttatagtacttatgtagttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaac 177  Q
    |||| |||| |||| | ||||||||| || ||  |||||||||| ||||||||||||| |||||||  ||| |||| |||||| | |||||| ||||| |    
T  26349723 atttttagtgcttaaggagttgtaaataagcccccctaaaattagaatcattattaaacgtctcttttgtagatcaatgtgttatgtttgtcgctttatc 26349624  T
Q  178 acactta 184  Q
    | |||||    
T  26349623 atactta 26349617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 32581187 - 32581253
Alignment:
Q  123 aatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaag 189  Q
    |||||||||||||||| | ||||||| |||| |||||| | |||||||||||| || ||||| ||||    
T  32581187 aatcattattaaatgtatgttaagtatatcaatgtgttgtgtttgtccctttagcatacttaataag 32581253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 26342977 - 26342912
Alignment:
Q  78 atttatagtacttatgtagttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctctt 143  Q
    |||| |||| |||| | ||||||||| ||  || |||||||||| |||||||||||||||||||||    
T  26342977 atttttagtgcttaaggagttgtaaataagtctccctaaaattagaatcattattaaatgtctctt 26342912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 26458100 - 26458019
Alignment:
Q  108 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaag 189  Q
    ||||| ||| || ||| |||||||||||||||||||||| |  ||| |||||| | ||||||| |||| |||||||| ||||    
T  26458100 ccttcgtaacatgaaagtcattattaaatgtctcttaagcaagtcaatgtgttatgtttgtccatttagcacacttaataag 26458019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 378 - 783
Target Start/End: Original strand, 24466929 - 24467334
Alignment:
Q  378 ggacagcaggtacataacacggttctgtggataaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcag 477  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24466929 ggacagcaggtacataacacggttctgtggacaaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaacaacaactcagtggcag 24467028  T
Q  478 gttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatgggg 577  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24467029 gctacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgccagtcgaagctgaagcatgggg 24467128  T
Q  578 tcttctagaggctattaaatttgttgttgctaaagacatgtcccatgtgatctttgagtctgattgcaaggtcattgttgacattgtaaactcctcttat 677  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||    
T  24467129 tcttctagaggctattaaatttgttgttgctaacgacatgtcccatgtgatctttgagtctgactgcaaggccattgttgacattgtaaactcctctcat 24467228  T
Q  678 ttgccacaaaacgagctgggagacattctatctacttgtaaggacttattatccattcatgctagttttattgtgaactttgttaggaggcaagcaaatg 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  24467229 ttgccacaaaacgagctgggagacattctatctacttgtaaggacttattatccattcatactagctttattgtgaactttgttaggaggcaagcaaatg 24467328  T
Q  778 aggttg 783  Q
    ||||||    
T  24467329 aggttg 24467334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 378 - 783
Target Start/End: Complemental strand, 4017566 - 4017161
Alignment:
Q  378 ggacagcaggtacataacacggttctgtggataaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcag 477  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4017566 ggacagcaggtacataacacggttctgtggacaaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaacaacaactcagtggcag 4017467  T
Q  478 gttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatgggg 577  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4017466 gctacgggttgtgcatccgtaactcaacagaccaatttatagccggtatgtcaaacttttcacactgctccctcatgccagtcgaagctgaagcatgggg 4017367  T
Q  578 tcttctagaggctattaaatttgttgttgctaaagacatgtcccatgtgatctttgagtctgattgcaaggtcattgttgacattgtaaactcctcttat 677  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||    
T  4017366 tcttctagaggctattaaatttgttgttgctaacgacatgtcccatgtgatctttgagtctgactgcaaggccattgttgacattgtaaactcctctcat 4017267  T
Q  678 ttgccacaaaacgagctgggagacattctatctacttgtaaggacttattatccattcatgctagttttattgtgaactttgttaggaggcaagcaaatg 777  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4017266 ttcccacaaaacgagctgggagacattctatctacttgtaaggacttattatccattcatgctagctttattgtgaactttgttaggaggcaagcaaatg 4017167  T
Q  778 aggttg 783  Q
    ||||||    
T  4017166 aggttg 4017161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 468 - 783
Target Start/End: Original strand, 18769766 - 18770082
Alignment:
Q  468 tcagtggcaggttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctg 567  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18769766 tcagtggcaggctacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgccagtcgaagctg 18769865  T
Q  568 aagcatggggtcttctagaggctattaaatttgttgttgctaaagacatgtcccatgtgatctttgagtctgattgcaaggtcattgttgacattgtaaa 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | | ||||||||||||||||    
T  18769866 aagcatggggtcttctagaggctattaaatttgttgttgctaaagacatgtcctatgtgatctttgagtctgactgcaaagcctttgttgacattgtaaa 18769965  T
Q  668 ctc--ctcttatttgccacaaaacgagctgggagacattctatctacttgtaaggacttattatccattcatgctagttttattgtgaactttgttagga 765  Q
    |||  |||| ||||||||||||| ||||| |||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  18769966 ctcctctctcatttgccacaaaatgagctaggagacattctatctacttgtaagg-tttattatccattcatactagttttattgtgaactttgttagga 18770064  T
Q  766 ggcaagcaaatgaggttg 783  Q
    | ||||||||||||||||    
T  18770065 gtcaagcaaatgaggttg 18770082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 3067320 - 3067142
Alignment:
Q  16 caaattggtttatcactttaatttataaagttcatcttccacttacaccaattacatacataatttatagtacttatgtagttgtaaaaaatccttccta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  3067320 caaattggtttatcactttaatttataaagttcatcttccacttacaccaattacata----atttatagtacttatgtagttgtaaaaaatccttccta 3067225  T
Q  116 aaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaagagggcacat 198  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3067224 aaattgaaatcattattaaatgtctcttaagtacatcattgtgttatttttgtccctttaacacacttagtaagagggcacat 3067142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 264 - 370
Target Start/End: Complemental strand, 3067077 - 3066972
Alignment:
Q  264 cctttcatggtaggaaaaggaaaatcacaaaagatgaattttattgttatacgacatatttatgcatgaattaagtgtgttgttgcatgatataagttga 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  3067077 cctttcatggtaggaaaaggaaaatcacaaaagatgaattttattattagacaacatattaatgcatgaatt-agtgtgttgttgcatgatataagttga 3066979  T
Q  364 atacacg 370  Q
    |||||||    
T  3066978 atacacg 3066972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 17374441 - 17374374
Alignment:
Q  108 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtcccttta 175  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||||||    
T  17374441 ccttcctaaaattaaaatcattattaaatgtctcttaagtaaatcaatgtgttgttattgtcccttta 17374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 17382291 - 17382233
Alignment:
Q  117 aattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtcccttta 175  Q
    |||||||||||||| ||||||||||||||||| |||| |||||| || |||||||||||    
T  17382291 aattaaaatcattactaaatgtctcttaagtaaatcaatgtgttgttattgtcccttta 17382233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 1950105 - 1950189
Alignment:
Q  99 gtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactt 183  Q
    |||||||  ||| |||||||||| |||||||||||| ||||||||||||| |||| |||||| |  |||||| |||| |||||||    
T  1950105 gtaaaaagccctccctaaaattagaatcattattaagtgtctcttaagtagatcaatgtgttgtgcttgtccttttagcacactt 1950189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 1969859 - 1969928
Alignment:
Q  115 aaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactta 184  Q
    ||||||| |||||||||||| | |||||||||||||||| |||||| |  |||||| |||| ||||||||    
T  1969859 aaaattagaatcattattaagtatctcttaagtacatcaatgtgttgtgcttgtccttttagcacactta 1969928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 17326642 - 17326687
Alignment:
Q  108 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatca 153  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  17326642 ccttcctaaaattaaaatcattactaaatctctcttaagtaaatca 17326687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 1939374 - 1939437
Alignment:
Q  97 ttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgtt 160  Q
    ||||||||| |||| | || |||||||||||||| ||| ||||||||||||| |||| ||||||    
T  1939374 ttgtaaaaagtcctccttataattaaaatcattagtaagtgtctcttaagtagatcaatgtgtt 1939437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 17366063 - 17365996
Alignment:
Q  108 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtcccttta 175  Q
    |||| |||||| |||||| |||| ||||| ||||||||||| |||| |||||| || |||||||||||    
T  17366063 cctttctaaaactaaaattattactaaatatctcttaagtaaatcaatgtgttgttattgtcccttta 17365996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 17356840 - 17356889
Alignment:
Q  109 cttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtg 158  Q
    ||||||||||||| |||||||| ||||| ||||||||||| |||| ||||    
T  17356840 cttcctaaaattataatcattactaaatatctcttaagtaaatcaatgtg 17356889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 33824 - 33911
Alignment:
Q  101 aaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 188  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||| | ||  ||||| |||||||||||||| ||| ||||||||    
T  33824 aaaaaatccttcctaaaattagaatcattgttaaatatctcttaagtataacaaagtgttatttttgtccctttagcacccttagtaa 33911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 29651334 - 29651229
Alignment:
Q  83 tagtacttatgtagttgtaaaaaa-tccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacac 181  Q
    |||| |||||| |||||||||||| || ||||||| |||| |||| |||| |||||||| |||| ||||||| | |||| |  |||||||||||||||||    
T  29651334 tagtgcttatgaagttgtaaaaaaatctttcctaatattataatccttatgaaatgtcttttaaatacatcaatatgttgtacttgtccctttaacacac 29651235  T
Q  182 ttagta 187  Q
    ||||||    
T  29651234 ttagta 29651229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 17224909 - 17224977
Alignment:
Q  110 ttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaaca 178  Q
    |||||||||||  |||||||| |||| |||||||||||| |||| |||||| | |||||||||||||||    
T  17224909 ttcctaaaattggaatcattagtaaaagtctcttaagtagatcaatgtgttgtatttgtccctttaaca 17224977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 4667723 - 4667795
Alignment:
Q  112 cctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactta 184  Q
    |||||| ||||||| |||||||| ||||||||||| | |||| |||||| | ||||||| |||| ||||||||    
T  4667723 cctaaatttaaaattattattaagtgtctcttaagaagatcaatgtgttatatttgtccatttatcacactta 4667795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 1207 - 1299
Alignment:
Q  96 gttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 188  Q
    ||||||||||||||||| ||||||||||||||||  |||||||| ||||||||||| |  ||||  | |||||||||||| ||| || |||||    
T  1207 gttgtaaaaaatccttcataaaattaaaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctttagcacgctgagtaa 1299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 12731680 - 12731767
Alignment:
Q  101 aaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 188  Q
    ||||||||||||||||||||| ||||||| |||||| |||| |||||| | ||  ||||| |||||||||||||| ||  ||||||||    
T  12731680 aaaaaatccttcctaaaattagaatcattgttaaatatctcctaagtataacaaagtgttatttttgtccctttagcaaccttagtaa 12731767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 15985940 - 15985985
Alignment:
Q  108 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatca 153  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||    
T  15985940 ccttcctaaaatttgaatcattattaaatgtctcttaagtatatca 15985985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 522 - 711
Target Start/End: Original strand, 42560902 - 42561091
Alignment:
Q  522 ggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatggggtcttctagaggctattaaatttgttgttgctaaagacatgtccc 621  Q
    |||||||| ||||| || |||| ||||||| | |  || || |||||||| ||||||||| | ||||| || |||||||   | ||||| |||||| |      
T  42560902 ggtatgtcgaacttctcccactactccctcctcctcgttgaggctgaagcttggggtctttttgaggccataaaatttgccttagctaatgacatgactt 42561001  T
Q  622 atgtgatctttgagtctgattgcaaggtcattgttgacattgtaaactcctcttatttgccacaaaacgagctgggagacattctatcta 711  Q
     ||| || ||||||| ||||||||| || ||||||||||| || ||||||||| |  |||| ||||| ||| | ||||||||||| ||||    
T  42561002 ttgttatatttgagtatgattgcaaagttattgttgacatagtgaactcctctcaaatgccccaaaatgagattggagacattctctcta 42561091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 10258518 - 10258436
Alignment:
Q  102 aaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactta 184  Q
    ||||| ||||| | |||||| |||||||||||| ||| |||||| || |||| |||||| | ||||| |||| ||||||||||    
T  10258518 aaaaacccttcgtcaaattagaatcattattaattgtttcttaactatatcagtgtgttgtatttgttccttaaacacactta 10258436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 11224078 - 11224041
Alignment:
Q  116 aaattaaaatcattattaaatgtctcttaagtacatca 153  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  11224078 aaattataatcattattcaatgtctcttaagtacatca 11224041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 41619880 - 41619941
Alignment:
Q  127 attattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 188  Q
    |||| ||||| ||||||| |||||||| | |||| | |||||||||||| ||||||||||||    
T  41619880 attactaaatatctcttaggtacatcaatatgttgtatttgtccctttatcacacttagtaa 41619941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 9246232 - 9246285
Alignment:
Q  132 taaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttag 185  Q
    |||||||||||||| || ||||||||||| |||||||||||||| |||||||||    
T  9246232 taaatgtctcttaaatatatcattgtgttatttttgtccctttagcacacttag 9246285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 16235551 - 16235459
Alignment:
Q  96 gttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 188  Q
    ||||||||||||||||| |||||||| |||||||  |||||||| ||||||||||| |  ||||  | |||||||||||| ||| || |||||    
T  16235551 gttgtaaaaaatccttcataaaattagaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctttagcacgctgagtaa 16235459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 9183992 - 9184050
Alignment:
Q  127 attattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttag 185  Q
    |||| |||||||||||||| || |||| |||||| ||||||| |||||| |||||||||    
T  9183992 attactaaatgtctcttaaatatatcaatgtgttatttttgttcctttagcacacttag 9184050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 9245080 - 9245142
Alignment:
Q  119 ttaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacac 181  Q
    ||||||| |||| ||||||||||| || || ||||||||||| ||| |||||||||| |||||    
T  9245080 ttaaaattattactaaatgtctctcaaatatatcattgtgttatttatgtccctttagcacac 9245142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 9276644 - 9276702
Alignment:
Q  127 attattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttag 185  Q
    |||| |||||||||||||| || || ||||| || |||||||||||||| |||||||||    
T  9276644 attagtaaatgtctcttaaatatattattgtattatttttgtccctttagcacacttag 9276702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 9287524 - 9287582
Alignment:
Q  127 attattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttag 185  Q
    |||| |||||||| ||||| || |||| |||||| |||||||||||||| |||||||||    
T  9287524 attactaaatgtcacttaaatatatcaatgtgttatttttgtccctttagcacacttag 9287582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1826 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 322 - 384
Alignment:
Q  123 aatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttag 185  Q
    |||||||| |||||||| ||||| || |||| |||||| ||||||||||||||  ||||||||    
T  322 aatcattactaaatgtcacttaaatatatcaatgtgttatttttgtccctttagtacacttag 384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 13314 - 13375
Alignment:
Q  123 aatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactta 184  Q
    |||||||  |||||||||||||| || |||| ||||||||||||||||| |||  |||||||    
T  13314 aatcattcataaatgtctcttaaatatatcaatgtgttctttttgtccccttagaacactta 13375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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