View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5584_low_11 (Length: 434)
Name: NF5584_low_11
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 417
Target Start/End: Complemental strand, 31170503 - 31170100
Alignment:
| Q |
12 |
agagacaagaaaaatgtgtactttgggcgggccttccaaagcatttgtactgtatagccgagcattatcgactagttgacaataagtcatgaaggcatct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31170503 |
agagacaagaaaaatgtgtactttgggcgggccttccaaagcatttgtgctgtatagccgagcattatcgactagttgacaataagtcatgaatgcatct |
31170404 |
T |
|
| Q |
112 |
gcaaatctcctgtgggatttcaattgtgatttcactcttactgctcttctacgcatgatagctctcctgttggaattcaaatgtatctgttagtaaagtc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31170403 |
gcaaatctcctgtgggatttcaattgtgatttcactcttactgctcttctacacatgatagctctcctgttggaattcaaatgtatctgttagtaaagtc |
31170304 |
T |
|
| Q |
212 |
cattttctcgaatttgagtagtgtgcagtcacaatcttgtgaccacaagcagtcagctacactcat-agtgttcgatcaatatgagatggctcgtatttc |
310 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
31170303 |
cattttctcgaatttgagtagtgtgccgtcacaatcttgtgaccacaagcagtcagctacactcataagtgttcggtcaatatgagatggctcgtatttc |
31170204 |
T |
|
| Q |
311 |
aaacttgtttttatttttnnnnnnnnnnntcaaaatctacattgaaatctggactgtatgatctttatcgaacaaccatcgatgtgtcagaccgcagtgg |
410 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31170203 |
aaacttgtttttatttt---aaaaaaaattcaaaatctacattgatatctggactgtatgatctttatcgaacaaccatcgatgtgtcagaccgcagtgg |
31170107 |
T |
|
| Q |
411 |
caggatt |
417 |
Q |
| |
|
||||||| |
|
|
| T |
31170106 |
caggatt |
31170100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 181
Target Start/End: Original strand, 38626683 - 38626824
Alignment:
| Q |
40 |
gggccttccaaagcatttgtactgtatagccgagcattatcgactagttgacaataagtcatgaaggcatctgcaaatctcctgtgggatttcaattgtg |
139 |
Q |
| |
|
||||||||||| |||||||| | |||||| || ||||| || |||| |||||||| ||||| || ||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
38626683 |
gggccttccaatgcatttgtgcagtatagacgggcattgtctactaaatgacaatatgtcataaatgcatcagcaaatctcttgtgagatttcaattgtg |
38626782 |
T |
|
| Q |
140 |
atttcactcttactgctcttctacgcatgatagctctcctgt |
181 |
Q |
| |
|
|| | ||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
38626783 |
atcttactctcacagctcttctagacatgatagctctcctgt |
38626824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University