View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_12 (Length: 408)
Name: NF5584_low_12
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 23369156 - 23368763
Alignment:
| Q |
1 |
ggagttaaactatatgtatatatactaataaagattatgggcgaacctttgatttcagcatcatcatatatatctactttcaaggcatccaaattgcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
23369156 |
ggagttaaactatatgtatatatactaataaagattatgggcgaacctttgatttcagcatcatcatatatatctactttgaaggcatccaaattacaat |
23369057 |
T |
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| Q |
101 |
tttcttgattaacccctgttaggcagtgtattaatttaactattatttgtgtaatatagaaagttgaatattcaacaattaccattggctgatgagtttg |
200 |
Q |
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|||||| |||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23369056 |
tttcttaattaacacatgttaggcaatgtattaatttaactattatttgtgtaatatagaaagttgaatattcaacaattaccattggctgatgagtttg |
23368957 |
T |
|
| Q |
201 |
atgatggaccaccttcttcaaatactgaatcaaaattaagtcttgtaataggaagctctttaaatctccttctcttttgaactctagttttttgtccctt |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23368956 |
atgatggaccaccttcttcaaataatgaatcaaaattaagtcttgtaataggaagctctttaaatctccttctcttttgaactctagttttttgtccctt |
23368857 |
T |
|
| Q |
301 |
tttggttgtatttagaacttggggcactacatattgcatcaatgtatgttgatgatgtcaacagattaatgatatggcccaagtaagttagatg |
394 |
Q |
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||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23368856 |
tttggttgtatttagaactagcggcactacatattgcatcagtgtatgttgatgatgtcaacagattaatgatatggcccaagtaagttagatg |
23368763 |
T |
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