View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5584_low_13 (Length: 396)
Name: NF5584_low_13
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_13 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold1476 (1 HSPs) |
| | |
|
| [»] scaffold0468 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 26)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 5689746 - 5690109
Alignment:
| Q |
19 |
gaaagcacgcaattgactgcagtgttgaactaatgcagaagttttcatgtttgatactttagaagtagctgaagtcgaatccatttccttagaaattgtg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5689746 |
gaaagcacgcaattgactgcagtgttgaactaatgcagaagttttcatgtttgatactttagaagtagctgaagtcgaatccatttccttagaaattgtg |
5689845 |
T |
|
| Q |
119 |
gcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5689846 |
gcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttctgaaccacactctacccatagacttcgaagccttgaaaggtggttggaaa |
5689945 |
T |
|
| Q |
219 |
tagatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttgg |
318 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5689946 |
tagatgacagttcctgagaactactacatggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttgg |
5690045 |
T |
|
| Q |
319 |
tgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcacaga |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5690046 |
tgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatgtccgcacaga |
5690109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 380
Target Start/End: Complemental strand, 5279061 - 5278699
Alignment:
| Q |
21 |
aagcacgcaattgactgcagtgttgaactaatgcagaagttttcatgtttgatactttagaagtagctgaagtcgaatccatttccttagaaattgtggc |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| |||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
5279061 |
aagcacgcaattgactgcagtgttgaattaatgcagaagtgttcatatttgatacttgtgaagtagcagaagtcgaatcaatttccttagaaattgtggc |
5278962 |
T |
|
| Q |
121 |
gtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaata |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5278961 |
atataaagcatccaaaatgatttttgcatctacagaaagttgaagttctgaaccacactctacccatagacttcgaagccttgaaaggtggtcggaaata |
5278862 |
T |
|
| Q |
221 |
gatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgaca---tggcagcagatgtttcaaagggggatgaaagagcacttgttg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5278861 |
gatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgaaatattggcagaagatgtttgaaagggggatgaaagagaacttgttg |
5278762 |
T |
|
| Q |
318 |
gtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5278761 |
gtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcaca |
5278699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 380
Target Start/End: Complemental strand, 5177234 - 5176872
Alignment:
| Q |
21 |
aagcacgcaattgactgcagtgttgaactaatgcagaagttttcatgtttgatactttagaagtagctgaagtcgaatccatttccttagaaattgtggc |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||| |||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
5177234 |
aagcacgcaattgactgcagtgttgaattaatgcagaagtgttcatatttgatatttttgaagtagcagaagtcgaatcaatttccttagaaattgtggc |
5177135 |
T |
|
| Q |
121 |
gtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaata |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5177134 |
atataaagcatccaaaatgatttttgcatctacagaaagttgaagttctgaaccacactctacccatagacttcgaagccttgaaaggtggtcggaaata |
5177035 |
T |
|
| Q |
221 |
gatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgaca---tggcagcagatgtttcaaagggggatgaaagagcacttgttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5177034 |
gatgacagttcctgagaactactatgtggtatatctaaagaaacgagagatgaaatattggcagaagatgtttgaaagggggatgaaagagaacttgttg |
5176935 |
T |
|
| Q |
318 |
gtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5176934 |
gtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcaca |
5176872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 27 - 382
Target Start/End: Complemental strand, 5345347 - 5344992
Alignment:
| Q |
27 |
gcaattgactgcagtgttgaactaatgcagaagttttcatgtttgatactttagaagtagctgaagtcgaatccatttccttagaaattgtggcgtataa |
126 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||||||| | |||| ||| |||||||||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
5345347 |
gcaattgaatgcagcgttgaattaatgcagaagttttcatatctgatgcttgtgaagtagctgaaatcgattccatttccttagaaaatgtggcgtataa |
5345248 |
T |
|
| Q |
127 |
agcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaatagatgac |
226 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5345247 |
agcatccaaaatgatttgtgcatcttcagaaagttgtagttctgagccacactctacccatagacttcgaagccttgaaaggtggttggaaatagttgac |
5345148 |
T |
|
| Q |
227 |
agttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatcc |
326 |
Q |
| |
|
|| || || || |||||||||||||||||||||||||| ||||||||||| |||| |||| ||| || | ||||||||| ||||||||||||||||| |
|
|
| T |
5345147 |
agatcttgggagctactatgtggtatatctaaagaaaccagagatgacatcgcaggagatatttgaacttcgaatgaaagagaacttgttggtgacatcc |
5345048 |
T |
|
| Q |
327 |
aagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcacaga |
382 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||||||||| || |||||| |
|
|
| T |
5345047 |
aagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacaga |
5344992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 27 - 372
Target Start/End: Original strand, 5243507 - 5243853
Alignment:
| Q |
27 |
gcaattgactgcagtgttgaactaatgcagaagttttcatgtttgatactttagaagtagctgaagtcgaatccatttccttagaaattgtggcgt-ata |
125 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||| ||||| || ||| |
|
|
| T |
5243507 |
gcaattgattgcaacgttgaattaatgcagaagttttcatatttgatgcttgtgaagtagctgaagtcgattccatttccttagaaaatgtggtgttata |
5243606 |
T |
|
| Q |
126 |
aagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaatagatga |
225 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||| ||||| || |||||||||||| |||| ||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
5243607 |
aggcatccaaaatgatttgtgcatcttcagaaagttgtagttctgagccacactctaccaataggcttcgaagccttgaaaggtggatggaaatagttga |
5243706 |
T |
|
| Q |
226 |
cagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatc |
325 |
Q |
| |
|
||| || || || |||||||| ||||||||||||||||| ||||||||||| |||| |||||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
5243707 |
cagctcttgggagctactatgcggtatatctaaagaaaccagagatgacatcgcaggagatgtttgaacttgggatgaaagagaacttgttggtgacatc |
5243806 |
T |
|
| Q |
326 |
caagaccaaatgatagatggaaatatatcacgtgagaatccttcata |
372 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
5243807 |
caagaccagatgatagatggaaatacatcgcgtgaaaatccttcata |
5243853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 27 - 380
Target Start/End: Original strand, 5066289 - 5066642
Alignment:
| Q |
27 |
gcaattgactgcagtgttgaactaatgcagaagttttcatgtttgatactttagaagtagctgaagtcgaatccatttccttagaaattgtggcgtataa |
126 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||| |||| ||||||| || ||||||||||||||||| |||| |||||||||| || |||||||| |
|
|
| T |
5066289 |
gcaattgatcgcaatgttgagttaatgcagaagttatcatatttgatatttgtgaagtagctgaagtcgattccacatccttagaaagagtagcgtataa |
5066388 |
T |
|
| Q |
127 |
agcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaatagatgac |
226 |
Q |
| |
|
||||||||| || ||| ||||||| | |||||||||| |||| |||| ||||| ||||| ||||||||||| |||| ||||| |||||||| ||||| |
|
|
| T |
5066389 |
agcatccaatattattgttgcatcattagaaagttgatgttctgaactgcactccacccaaagacttcgaagacttggaaggtacttggaaattgatgat |
5066488 |
T |
|
| Q |
227 |
agttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatcc |
326 |
Q |
| |
|
||||| || || ||||||||||||| |||||||| ||||||||||| |||| || |||||||| ||| |||||| ||| | ||||||||||||||| |
|
|
| T |
5066489 |
agttcatgggagctactatgtggtacatctaaaggaacaagagatggcatgatagtagatgtttgaaatagggatgggagattatttgttggtgacatcc |
5066588 |
T |
|
| Q |
327 |
aagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
||||| |||||||||||||||| | |||||| |||||||||||||| ||||||| |
|
|
| T |
5066589 |
aagacaaaatgatagatggaaacacatcacgcgagaatccttcatagccgcaca |
5066642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 106 - 377
Target Start/End: Original strand, 5157302 - 5157573
Alignment:
| Q |
106 |
cttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaa |
205 |
Q |
| |
|
||||||| ||||||| || | ||||||||||| ||| |||||| | ||||||||||||||| || | ||||| ||||||||||||||||| |||| | |
|
|
| T |
5157302 |
cttagaatttgtggcatacagggcatccaaaattattgctgcatcatgagaaagttgaagttccgagctgcactccacccatagacttcgaagacttgga |
5157401 |
T |
|
| Q |
206 |
aggtggttggaaatagatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaa |
305 |
Q |
| |
|
|| | |||||| ||||| |||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| || |||| | |
|
|
| T |
5157402 |
agacactgggaaatcgatgatagttcctgggaattactatgtggtacatctaaaggaacaagagatgacatggcagcagatgtttgaaatggagatggga |
5157501 |
T |
|
| Q |
306 |
gagcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgc |
377 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| |||| |
|
|
| T |
5157502 |
gattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcatagccgc |
5157573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 104 - 380
Target Start/End: Complemental strand, 5426319 - 5426043
Alignment:
| Q |
104 |
tccttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttg |
203 |
Q |
| |
|
|||||| || ||||||| || || ||||| ||||| ||| |||||| | ||||||||||||||| || | ||||| ||||| || ||| |||| ||| |
|
|
| T |
5426319 |
tccttataacttgtggcatacaaggcatctaaaattattgctgcatcatgagaaagttgaagttctgagctgcactccacccaaagcctttgaagatttg |
5426220 |
T |
|
| Q |
204 |
aaaggtggttggaaatagatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatga |
303 |
Q |
| |
|
||||| | |||||| ||||| |||||||| ||| |||||||||||| |||||||| |||||||||||||||| | ||||||||| ||| ||||||| |
|
|
| T |
5426219 |
gaaggtactgggaaatcgatgatagttcctgggaattactatgtggtacatctaaaggaacaagagatgacatgatatcagatgtttgaaatggggatgg |
5426120 |
T |
|
| Q |
304 |
aagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
||| | |||||||||||||||||||||||||||| | |||||| | ||||||||| ||||||||||| ||||||| |
|
|
| T |
5426119 |
gagattatttgttggtgacatccaagaccaaatgatcgctggaaacacatcacgtgaaaatccttcatagccgcaca |
5426043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 107 - 380
Target Start/End: Original strand, 5073583 - 5073856
Alignment:
| Q |
107 |
ttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaa |
206 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||| || || || || ||||| |||| |||||||| || || |
|
|
| T |
5073583 |
ttagaatttgtggcatataaggcatccaaaattctttctgcatcttgagaaagttgaagttttgatccgcattccacccaaagacatcgaagccatggaa |
5073682 |
T |
|
| Q |
207 |
ggtggttggaaatagatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaag |
306 |
Q |
| |
|
||| |||||||||||||| ||||| || |||||||||| | ||| |||||||| |||| | |||||||| |||||| || | ||| ||||| | || |
|
|
| T |
5073683 |
ggtaattggaaatagatgatagttcatgggaactactatttagtacatctaaaggaacatgggatgacattgcagcaaccgtctgaaatggggaagtgag |
5073782 |
T |
|
| Q |
307 |
agcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
| | |||| ||||||||||||||||||||||| ||||| || | ||||||||||||||||||||| ||||||| |
|
|
| T |
5073783 |
attatttgtcggtgacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcatagccgcaca |
5073856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 115 - 371
Target Start/End: Complemental strand, 5097106 - 5096850
Alignment:
| Q |
115 |
tgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttg |
214 |
Q |
| |
|
|||||| ||||| ||||||||||| ||| ||||| | ||||||||||||||| || | ||||| ||||| ||||||||||| |||| ||||| ||| |
|
|
| T |
5097106 |
tgtggcatataaggcatccaaaattattgcagcatcatgagaaagttgaagttctgagctgcactccacccaaagacttcgaagacttggaaggtacttg |
5097007 |
T |
|
| Q |
215 |
gaaatagatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttg |
314 |
Q |
| |
|
||||| ||| | ||||| || |||||||||| ||||| ||||| ||||||||| ||||||||| || |||||||| || ||||||| ||| | ||| |
|
|
| T |
5097006 |
gaaatcgataatagttcatgggaactactatttggtacatctacagaaacaagggatgacatgacattagatgtttgaactagggatgagagattatttg |
5096907 |
T |
|
| Q |
315 |
ttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcat |
371 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||| | ||||||||| |||||||||| |
|
|
| T |
5096906 |
ttggtgacaaccaagaccagatgatagacggaaacacatcacgtgaaaatccttcat |
5096850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 104 - 382
Target Start/End: Original strand, 5128089 - 5128367
Alignment:
| Q |
104 |
tccttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttg |
203 |
Q |
| |
|
|||||| || ||||||| || || ||||||||||| ||| |||||| | ||||||||||||||| || | ||||| | ||| ||||||||||| |||| |
|
|
| T |
5128089 |
tccttataatttgtggcatacaaggcatccaaaattattgctgcatcatgagaaagttgaagttctgagctgcactccatccaaagacttcgaagacttg |
5128188 |
T |
|
| Q |
204 |
aaaggtggttggaaatagatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatga |
303 |
Q |
| |
|
||||| | ||| || || || ||||| || |||||||||||||||| ||||| || |||||||||||||||| | |||||||| ||| ||| || |
|
|
| T |
5128189 |
gaaggtactgggacatcgacgatagttcgtgggaactactatgtggtacatctagaggaacaagagatgacatgatattagatgtttgaaataggggtgg |
5128288 |
T |
|
| Q |
304 |
aagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcacaga |
382 |
Q |
| |
|
||| || |||||||||||||||||||||| |||||||||||||| | ||||| ||| |||||||||| ||||||||| |
|
|
| T |
5128289 |
gagatcatttgttggtgacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcatggccgcacaga |
5128367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 372
Target Start/End: Original strand, 5102310 - 5102554
Alignment:
| Q |
128 |
gcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaatagatgaca |
227 |
Q |
| |
|
||||||||||| ||| |||||| | |||||||||| |||| |||| ||||| ||||| ||||||||||| ||| ||||| ||||||| ||||| | |
|
|
| T |
5102310 |
gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagatttggaaggtacatggaaatcgatgata |
5102409 |
T |
|
| Q |
228 |
gttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatcca |
327 |
Q |
| |
|
|||| || |||||||||||||||| ||||| || |||||||||||||||| | |||||||| ||| ||| || |||| | |||||||||||||||| |
|
|
| T |
5102410 |
gttcgtgggaactactatgtggtacatctagaggaacaagagatgacatgatattagatgtttgaaataggggtggaagattatttgttggtgacatcca |
5102509 |
T |
|
| Q |
328 |
agaccaaatgatagatggaaatatatcacgtgagaatccttcata |
372 |
Q |
| |
|
|||||| |||||||||||||| | |||| |||| | ||||||||| |
|
|
| T |
5102510 |
agaccagatgatagatggaaacacatcatgtgaaagtccttcata |
5102554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 380
Target Start/End: Complemental strand, 5397365 - 5397083
Alignment:
| Q |
98 |
tccatttccttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaa |
197 |
Q |
| |
|
|||| ||| |||||| |||| || ||| |||||||||||| ||||||||||| |||||||||| ||||||| || || || || |||||||||| |
|
|
| T |
5397365 |
tccaattctttagaatttgtagcacatagagcatccaaaattatttttgcatcaagagaaagttgatcttcagaattgcaatccacgcaaagacttcgaa |
5397266 |
T |
|
| Q |
198 |
gccttgaaaggtggttggaaatagatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaaggg |
297 |
Q |
| |
|
|||||| ||| || || |||| |||||| ||||| || ||||||||| || || | |||||||| |||||||||||||||||||||||||| ||| || |
|
|
| T |
5397265 |
gccttggaagttgtttcgaaaaagatgatagttcgtgcgaactactacttgttacgtgtaaagaaataagagatgacatggcagcagatgtttgaaatgg |
5397166 |
T |
|
| Q |
298 |
ggatgaaagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
||| || | |||||||||||||||||||| ||||||||| |||||| | |||| ||| ||||||||||||||||||| |
|
|
| T |
5397165 |
aaatgggaggttaattgttggtgacatccaagacgaaatgatagctggaaacacttcacatgaaaatccttcatatccgcaca |
5397083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 248 - 372
Target Start/End: Original strand, 5354430 - 5354554
Alignment:
| Q |
248 |
ggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatccaagaccaaatgatagatggaa |
347 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||| ||| || ||| ||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5354430 |
ggtacatcaaaagaaacaagagatgacatggcagcagatgtttgaaatggagatcggagattatttgttggtgacatccaagaccaaatgatagatggaa |
5354529 |
T |
|
| Q |
348 |
atatatcacgtgagaatccttcata |
372 |
Q |
| |
|
| | ||||||||||||||||||||| |
|
|
| T |
5354530 |
acacatcacgtgagaatccttcata |
5354554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 68 - 330
Target Start/End: Complemental strand, 5350833 - 5350571
Alignment:
| Q |
68 |
tttgatactttagaagtagctgaagtcgaatccatttccttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagtt |
167 |
Q |
| |
|
||||||||||| || ||||||| ||| || |||| |||||| || ||||||| || || ||||||||||| ||| |||||| | |||||||||||||| |
|
|
| T |
5350833 |
tttgatacttttgatgtagctgtagttgattccaactccttataatttgtggcatacaaggcatccaaaattattgctgcatcatgagaaagttgaagtt |
5350734 |
T |
|
| Q |
168 |
cagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaatagatgacagttcctgagaactactatgtggtatatctaaagaaacaag |
267 |
Q |
| |
|
| || | |||||| || || |||||| |||| |||| ||| | |||||| ||||| |||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
5350733 |
ccgagctacactccacacaaagactttgaagacttggaagacactgggaaatcgatgatagttcctgggaactactatgtggtacatctaaaggaacaag |
5350634 |
T |
|
| Q |
268 |
agatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatccaaga |
330 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||||| || | ||||||||||||||||||| |
|
|
| T |
5350633 |
agatgacatgatgtcagatgtttgaaatggggatgggtgattatttgttggtgacatccaaga |
5350571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 367
Target Start/End: Complemental strand, 5370939 - 5370717
Alignment:
| Q |
145 |
tgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaatagatgacagttcctgagaactacta |
244 |
Q |
| |
|
|||||| | ||||||||||||||| || | ||| || ||||| ||||||||||| ||| ||||| ||| |||| ||||| ||||| || ||||||||| |
|
|
| T |
5370939 |
tgcatcatgagaaagttgaagttccgagctacattccacccaaagacttcgaagaattggaaggtacttgaaaattgatgatagttcatgggaactacta |
5370840 |
T |
|
| Q |
245 |
tgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatccaagaccaaatgatagatg |
344 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| | | |||||| ||| ||| || ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
5370839 |
tgtggtacatctaaaggaacaagagatgacatcatattacatgtttgaaataggggtgggagataatttgttggtgacatccaagaccaaatgatagatg |
5370740 |
T |
|
| Q |
345 |
gaaatatatcacgtgagaatcct |
367 |
Q |
| |
|
|||| | |||| |||| |||||| |
|
|
| T |
5370739 |
gaaaaacatcatgtgaaaatcct |
5370717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 5434587 - 5434459
Alignment:
| Q |
114 |
ttgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggtt |
213 |
Q |
| |
|
||||||| | ||| ||||||||||| || |||||||||||||||||||||| ||| || | ||| |||| |||||||||| |||||| |||||| ||||| |
|
|
| T |
5434587 |
ttgtggcatgtaaggcatccaaaattatctttgcatcttcagaaagttgaaattccgacctacaatctatccatagactttgaagccctgaaagctggtt |
5434488 |
T |
|
| Q |
214 |
ggaaatagatgacagttcctgagaactac |
242 |
Q |
| |
|
||||||||| |||||||| || ||||||| |
|
|
| T |
5434487 |
ggaaatagacgacagttcatgtgaactac |
5434459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 380
Target Start/End: Complemental strand, 5383741 - 5383459
Alignment:
| Q |
98 |
tccatttccttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaa |
197 |
Q |
| |
|
|||| ||| |||||| ||| ||| ||||| || |||||||| ||| ||||| | ||||| ||||||||| || | ||||| ||||| ||||| |||| |
|
|
| T |
5383741 |
tccaattctttagaatttgcggcatataaggcttccaaaataattgcagcatcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaa |
5383642 |
T |
|
| Q |
198 |
gccttgaaaggtggttggaaatagatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaaggg |
297 |
Q |
| |
|
|||| ||||| |||||||| ||||| || || || ||||||||| |||||| ||| |||| |||| ||||||||||| ||| ||||||| ||| | |
|
|
| T |
5383641 |
tacttggaaggtacttggaaattgatgataggtcatgggaactactacgtggtacatcgaaaggaacatgagatgacatgatagctgatgtttgaaaatg |
5383542 |
T |
|
| Q |
298 |
ggatgaaagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
| ||| ||| | |||||| |||||||||||| |||||| |||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
5383541 |
gaatgggagattatttgttgaggacatccaagacttaatgatggatggaaacacatcacgtgagaatccttcatggccgcaca |
5383459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 128 - 333
Target Start/End: Original strand, 5137362 - 5137567
Alignment:
| Q |
128 |
gcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaatagatgaca |
227 |
Q |
| |
|
||||||||||| ||| |||||| | |||||||||| |||| |||| ||||| ||||| ||||||||||| |||| ||||| | |||| ||||| | |
|
|
| T |
5137362 |
gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggtacacgaaaatcgatgata |
5137461 |
T |
|
| Q |
228 |
gttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatcca |
327 |
Q |
| |
|
|||| || |||||||||||||||| ||||| || |||||||||||||||| | |||||||| ||| ||| || ||| | |||||||||||||||| |
|
|
| T |
5137462 |
gttcgtgggaactactatgtggtacatctagaggaacaagagatgacatgatattagatgtttgaaataggggtgggagattatttgttggtgacatcca |
5137561 |
T |
|
| Q |
328 |
agacca |
333 |
Q |
| |
|
|||||| |
|
|
| T |
5137562 |
agacca |
5137567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 5181778 - 5181875
Alignment:
| Q |
283 |
agatgtttcaaagggggatgaaagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
|||||||| ||| ||||||| ||| | |||| ||||||||||||||||||||||| | |||||| | |||| ||||||||||||||||||| |||| |
|
|
| T |
5181778 |
agatgtttgaaatggggatgggagattatttgtcggtgacatccaagaccaaatgatcgctggaaacacatcatgtgagaatccttcatatccacaca |
5181875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 5434236 - 5434168
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
5434236 |
ttgttggtgacatccaagactgaatgataaatggaaataaatcgtgtgagaatccttcataaccgcaca |
5434168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 5181632 - 5181735
Alignment:
| Q |
122 |
tataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaatag |
221 |
Q |
| |
|
||||||||||||||||| ||| || |||| ||||||||||||||| || |||||||| ||||| |||| |||||||| || ||||| ||||| |||| |
|
|
| T |
5181632 |
tataaagcatccaaaattctttctgtgtcttgagaaagttgaagttctgagccacactcaacccaaagacatcgaagccatggaaggtacttggacatag |
5181731 |
T |
|
| Q |
222 |
atga |
225 |
Q |
| |
|
|||| |
|
|
| T |
5181732 |
atga |
5181735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 256
Target Start/End: Complemental strand, 5447990 - 5447838
Alignment:
| Q |
104 |
tccttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttg |
203 |
Q |
| |
|
|||||| || ||||||| || |||||||||||||| ||| ||| || | ||||||||||||||| || | ||| ||||| ||||||||||| |||| |
|
|
| T |
5447990 |
tccttataatttgtggcatacaaagcatccaaaattattgctgcctcatgagaaagttgaagttctgagctgaactgcacccaaagacttcgaagacttg |
5447891 |
T |
|
| Q |
204 |
aaaggtggttggaaatagatgacagttcctgagaactactatgtggtatatct |
256 |
Q |
| |
|
|||| | ||||| ||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
5447890 |
gtaggtactgggaaaacgatgatagttcctgagaactactgtgtggtacatct |
5447838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 5447785 - 5447720
Alignment:
| Q |
315 |
ttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| | |||| | ||| |||||||| ||||||||| |
|
|
| T |
5447785 |
ttggtgacatccaagaccgaataatagatggaaacacatcatgcgaggatccttcaaatccgcaca |
5447720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 5179731 - 5179676
Alignment:
| Q |
323 |
atccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgca |
378 |
Q |
| |
|
|||||||||| ||||||| |||||| || ||||||||||||||||| ||| ||||| |
|
|
| T |
5179731 |
atccaagaccgaatgatatatggaactacatcacgtgagaatcctttatagccgca |
5179676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 5281490 - 5281435
Alignment:
| Q |
323 |
atccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgca |
378 |
Q |
| |
|
|||||||||| ||||||| |||||| || ||||||||||||||||| ||| ||||| |
|
|
| T |
5281490 |
atccaagaccgaatgatatatggaactacatcacgtgagaatcctttatagccgca |
5281435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 182 - 380
Target Start/End: Original strand, 8650 - 8848
Alignment:
| Q |
182 |
acccatagacttcgaagccttgaaaggtggttggaaatagatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcag |
281 |
Q |
| |
|
||||| |||||||||| |||| ||||| |||||||| ||||| |||||||| ||||||||| |||||| |||||||| |||| ||||||||||| || |
|
|
| T |
8650 |
acccaaagacttcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatag |
8749 |
T |
|
| Q |
282 |
cagatgtttcaaagggggatgaaagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
|||||||| |||| |||| ||| | ||||||| |||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
8750 |
tagatgtttgaaagtaagatgggagattatttgttggagacatccaagacttaatgatagatggaaacacatcacgtgagaatccttcatggccgcaca |
8848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 98 - 380
Target Start/End: Original strand, 36213495 - 36213777
Alignment:
| Q |
98 |
tccatttccttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaa |
197 |
Q |
| |
|
|||| ||||||| || | ||||| ||||| ||||||||||| |||| |||||| | |||||||||| || || | |||| ||||| |||||||| | |
|
|
| T |
36213495 |
tccaattccttataattagtggcatataaggcatccaaaattatttctgcatcatgagaaagttgagactctgagctgcactgcacccaaagacttcgta |
36213594 |
T |
|
| Q |
198 |
gccttgaaaggtggttggaaatagatgacagttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaaggg |
297 |
Q |
| |
|
| || | ||||| | ||||| ||||||||| | || ||| | || |||| || ||||| || |||||||||||||||| || |||||||| ||| | |
|
|
| T |
36213595 |
gactcggaaggtacgtcgaaattgatgacagtgcatgggaattgctgtgtgatacatctagaggaacaagagatgacatgatagtagatgtttgaaatcg |
36213694 |
T |
|
| Q |
298 |
ggatgaaagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
| | | ||| || ||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||| |
|
|
| T |
36213695 |
gaacgggagaacatttgttggtgacatccaagaccaaatgatagatggaaacacatcatgtgagaatccttcatagccgcaca |
36213777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 380
Target Start/End: Complemental strand, 8877994 - 8877742
Alignment:
| Q |
128 |
gcatccaaaatgatttttgcatcttcagaaagttgaagttcagaaccacactctacccatagacttcgaagccttgaaaggtggttggaaatagatgaca |
227 |
Q |
| |
|
|||||||||||| || | |||||| ||||| | |||||| || |||||||| || || ||||||||||| | || |||||| || || || |||| | |
|
|
| T |
8877994 |
gcatccaaaatggttgtcacatcttgagaaaatcgaagtttggatccacactccactcaaagacttcgaagacctggaaggtgctttgatattgatgcta |
8877895 |
T |
|
| Q |
228 |
gttcctgagaactactatgtggtatatctaaagaaacaagagatgacatggcagcagatgtttcaaa-gggggatgaaagagcacttgttggtgacatcc |
326 |
Q |
| |
|
||| || |||||||||| ||||| |||||||||||| ||||||||||| | | |||||||| ||| ||||| || | | | ||||||||||||||| |
|
|
| T |
8877894 |
gtttgtgggaactactatatggtacatctaaagaaactagagatgacatagtggtagatgtttgaaatgggggctgtta-attatttgttggtgacatcc |
8877796 |
T |
|
| Q |
327 |
aagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || ||||||||||| ||||||| |
|
|
| T |
8877795 |
aagaccaaatgatagatggaaacacatcacgcgaaaatccttcatagccgcaca |
8877742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 12599054 - 12599120
Alignment:
| Q |
314 |
gttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||||| | ||||||||| |||||||||||||| |||| |
|
|
| T |
12599054 |
gttggtgacatccaagaccaattgagagaaggaaaaacatcacgtgataatccttcatatccacaca |
12599120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 20812476 - 20812415
Alignment:
| Q |
314 |
gttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatcc |
375 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| | ||||||||| |||||||| ||||| |
|
|
| T |
20812476 |
gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcgtatcc |
20812415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 20838831 - 20838770
Alignment:
| Q |
314 |
gttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatcc |
375 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| | |||| |||| |||||||||||||| |
|
|
| T |
20838831 |
gttggtgacatccaagaccaaatgagagaaggaaaaacatcatgtgataatccttcatatcc |
20838770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 4344903 - 4344779
Alignment:
| Q |
256 |
taaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatca |
355 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||| ||| | || || ||| || ||||||||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
4344903 |
taaagaaacaagcgatgacatcccagcagttgtttgaaaagtgggcgagagaccatttgttggtgacatccaagaccaaatgatagaaggaaacacatca |
4344804 |
T |
|
| Q |
356 |
cgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
4344803 |
cgtgagaatccttcatatccacaca |
4344779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 4361334 - 4361210
Alignment:
| Q |
256 |
taaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatca |
355 |
Q |
| |
|
|||| ||||||| |||||||| |||||| ||||| ||| | || || ||| || |||||||||||||||||||| |||||||||| ||||| | |||| |
|
|
| T |
4361334 |
taaaaaaacaagggatgacatcccagcagttgtttgaaaagtgggcgagagaccatttgttggtgacatccaagacgaaatgatagaaggaaacacatca |
4361235 |
T |
|
| Q |
356 |
cgtgagaatccttcatatccgcaca |
380 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
4361234 |
cgtgagaatccttcatatccacaca |
4361210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 4320502 - 4320569
Alignment:
| Q |
315 |
ttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcacaga |
382 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
4320502 |
ttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaga |
4320569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 4123819 - 4123889
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcacaga |
382 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||| | |||||| ||||||||||||||||| |||||| |
|
|
| T |
4123819 |
ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgagagaatccttcatatccacacaga |
4123889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 4335546 - 4335486
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcata |
372 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||| | |||||| |||||||||||||| |
|
|
| T |
4335546 |
ttgttggtaccatccaagaccaaattatagaaggaaacacatcacgggagaatccttcata |
4335486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 6498410 - 6498462
Alignment:
| Q |
316 |
tggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatcctt |
368 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||| ||||||||| ||||||| |
|
|
| T |
6498410 |
tggtgacatccaagaccgaatgagagaaggaaatacatcacgtgaaaatcctt |
6498462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 6532116 - 6532170
Alignment:
| Q |
316 |
tggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttca |
370 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| |||| ||| ||||||||| |
|
|
| T |
6532116 |
tggtgacatccaagaccgaatgatagaaggaaatacatcatttgaaaatccttca |
6532170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 6758925 - 6758867
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttca |
370 |
Q |
| |
|
||||||||||||||| ||||| ||||| | | |||||||||||||||| ||||||||| |
|
|
| T |
6758925 |
ttgttggtgacatcctagaccgaatgacaaaaggaaatatatcacgtgcaaatccttca |
6758867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 47986752 - 47986821
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcacag |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| |
|
|
| T |
47986752 |
ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacag |
47986821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 47996039 - 47996108
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcacag |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| |
|
|
| T |
47996039 |
ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacag |
47996108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 48005326 - 48005395
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcacag |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| |
|
|
| T |
48005326 |
ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacag |
48005395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 48014611 - 48014680
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgcacag |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| |
|
|
| T |
48014611 |
ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacag |
48014680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 6905806 - 6905872
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgca |
378 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
6905806 |
ttgttggtgacatccaagaccaaatgagagaaggaaaaatatcacgtgataatccttcatatccgca |
6905872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 32411083 - 32411146
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatcc |
375 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||||| ||| |||| |||||||||||||| |
|
|
| T |
32411083 |
ttgttggtgacatctaagaccaaatgagagagggaaatacttcatgtgataatccttcatatcc |
32411146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1476 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1476
Description:
Target: scaffold1476; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 1591 - 1506
Alignment:
| Q |
80 |
gaagtagctgaagtcgaatccatttccttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaag |
165 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
1591 |
gaagtagctgaagtcgatgccaaatccttagaaagtgtggcgtaaaaagaatccaaaatgatttttccatctttagacagttgaag |
1506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 3407323 - 3407386
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatcc |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||| |
|
|
| T |
3407323 |
ttgttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataatccttgatatcc |
3407386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 3315056 - 3314998
Alignment:
| Q |
315 |
ttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatat |
373 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | ||||||||| || ||||||||| |
|
|
| T |
3315056 |
ttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataaaccttcatat |
3314998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 3262629 - 3262682
Alignment:
| Q |
314 |
gttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatcct |
367 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| | ||||||||| |||||| |
|
|
| T |
3262629 |
gttggtgacatccaagaccaaatgatagagggaaaaacatcacgtgaaaatcct |
3262682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 3286516 - 3286578
Alignment:
| Q |
313 |
tgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatcc |
375 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| |||| | |||| |||| |||||||||||||| |
|
|
| T |
3286516 |
tgttggtgacatccaagacctaatgagagattgaaaaacatcatgtgataatccttcatatcc |
3286578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 31176046 - 31175985
Alignment:
| Q |
314 |
gttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatcc |
375 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| | |||| ||| |||||||||||||| |
|
|
| T |
31176046 |
gttggtgacatccaagaccaaatgagagaaggaaaaacgtcacatgataatccttcatatcc |
31175985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 3325003 - 3325063
Alignment:
| Q |
315 |
ttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatcc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | ||| |||| | |||||||||||| |
|
|
| T |
3325003 |
ttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgatagtccttcatatcc |
3325063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 3391536 - 3391599
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatcc |
375 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| ||||| | || | |||| |||||||||||||| |
|
|
| T |
3391536 |
ttgttggtgacatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatcc |
3391599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 22583895 - 22583980
Alignment:
| Q |
80 |
gaagtagctgaagtcgaatccatttccttagaaattgtggcgtataaagcatccaaaatgatttttgcatcttcagaaagttgaag |
165 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||||| |||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
22583895 |
gaagtagctgaagtcgatgtcaaatccttagaatgtgtggcgtaaaaagaatccaaaatgatttttccatctttagaaagttgaag |
22583980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 372
Target Start/End: Original strand, 22584084 - 22584154
Alignment:
| Q |
302 |
gaaagagcacttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcata |
372 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| |||||||||| || ||| | | ||| ||||||||| |
|
|
| T |
22584084 |
gaaagtgcacttgttgatgacatccaagaccaaatcatagatggaactacatcgcttaagagtccttcata |
22584154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 6146 - 6212
Alignment:
| Q |
312 |
ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatatccgca |
378 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
6146 |
ttgttggtgacatccaagaccaaataagggaaggaaaaacatcacgtgataatccttcatatccgca |
6212 |
T |
|
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