View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_14 (Length: 393)
Name: NF5584_low_14
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 32467916 - 32468278
Alignment:
| Q |
17 |
aaactataaatacaaaagaaacccaaaatcattaaaccacacttatacatgtcaacggttcttaaaaataattttttacaagaatnnnnnnnnnnncatt |
116 |
Q |
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| T |
32467916 |
aaactataaatccaaaagaaacccaaaatcattaaaccacacctatacatgtcaacggttcttaaaaataattttttacaagaataaaaaaaaat--att |
32468013 |
T |
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| Q |
117 |
aagtaaaaaattgtcacataaaatcaagatggttggtgctgtttaacttcatttgattgtttagtgaatgtgacttagagaaagaagaagatgatgagtc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32468014 |
aagtaaaaaattgtcacataaaatcaagatggttggtgctgtttaacttcatttgattgtttggtgaatgtgacttagagaaagaagaagatgatgagtc |
32468113 |
T |
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| Q |
217 |
acaaaggttatgaggtgaaaataatgagaatggagtatcattcaaggaagttgatggg-ttttttatgagcatagttgtgtagtgttgttttgagaaatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32468114 |
acaaaggttatgaggtgaaaataatgagaatggagtatcattcaaggaagttgatgggtttttttatgagcatagttgtgtagtgttgttttgagaaatg |
32468213 |
T |
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| Q |
316 |
tgagttcacttcctatgaatttgtttatttgctatattatttccctttgtttttcagttctcttc |
380 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32468214 |
tgagttcacttcctatggatttgtttatttgctctattatttccctttgtttttcagttctcttc |
32468278 |
T |
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