View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_17 (Length: 368)
Name: NF5584_low_17
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 2366016 - 2366354
Alignment:
| Q |
19 |
agcttttacatttaaatgtcttttatttattgttaaatgatttcacctaagacatgcaatgtcaagatttgtctcacgtagttagctcggttgttgagct |
118 |
Q |
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| T |
2366016 |
agcttttacatttaaatgtcttttatttattgttaaatgatttcacctaacacatgcaatgtcaagatttgtctcacgtagttagctcggttgttgagct |
2366115 |
T |
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| Q |
119 |
aagggataccaaatgattttaaaggaggtttagggttcaaaccgtgaaaactaacgtaaccactaaattactaaatttgtctatcgaaaaacatgcagta |
218 |
Q |
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| T |
2366116 |
aaaggataccaaatgattttaaaggaggtttagggttcaaaccgtgaaaactaacgtaatcactaagttactaaatttgtctatcgaaaaacatgcagta |
2366215 |
T |
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| Q |
219 |
tccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggaggacaggta |
318 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |
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| T |
2366216 |
tccagaccctcatttcaagaaaaaacatcataaaagaagaggtctgcagaagcctttggttggtgctattgtcgataatttatctccagggggacatgta |
2366315 |
T |
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| Q |
319 |
tattttctgcatgctctaatataagttcactactcctttg |
358 |
Q |
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| T |
2366316 |
tattttctgcatgctctaatataagtt-actactcctttg |
2366354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 210 - 341
Target Start/End: Original strand, 2362040 - 2362171
Alignment:
| Q |
210 |
catgcagtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccagga |
309 |
Q |
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| T |
2362040 |
catgcagtgtccagaccctcatttaaagaaaaaatatcataaaagaagagttttgcaaaagcctttggttggcactattgtagataatttatctccaggg |
2362139 |
T |
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| Q |
310 |
ggacaggtatattttctgcatgctctaatata |
341 |
Q |
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| T |
2362140 |
ggacaggtatattttctgcatgctctaatata |
2362171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 211 - 333
Target Start/End: Original strand, 2354058 - 2354180
Alignment:
| Q |
211 |
atgcagtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggag |
310 |
Q |
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||||||| |||||||||||||||||||||||||||| |||| ||||| | | ||||||||||||||||||| |||||||| |||||||||||||| || | |
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| T |
2354058 |
atgcagtgtccagaccctcatttcaagaaaaaacatcataagagaagggttttgcagaagcctttggttggtgctattgtagataatttatctcctgggg |
2354157 |
T |
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| Q |
311 |
gacaggtatattttctgcatgct |
333 |
Q |
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| T |
2354158 |
gacaggtatattttctgtatgct |
2354180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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