View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_18 (Length: 367)
Name: NF5584_low_18
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 6837991 - 6838323
Alignment:
| Q |
10 |
gcagagacaaagaagtaccataaccaacgtgtgaagaaatggtttgatactctaaaacatgaggtatatgaagtagatcaattgttggatgagattgata |
109 |
Q |
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| T |
6837991 |
gcagagacaaagaagtaccaaaaccaaaatgtgaagaagtggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattgata |
6838090 |
T |
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| Q |
110 |
caaatgtaaaactcaagagcaaggatatgttgggatcaaaggttaaatactggctttcagctatcacaaatccatttgaatctaggatcaaagagttgct |
209 |
Q |
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| T |
6838091 |
caaatgtaaaactcaagagcaaggatatgttgggatcaaaggttaaatacttgctttcagctatcactaatccatttgaatctaggatcaaagagttgct |
6838190 |
T |
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| Q |
210 |
aggcaagctaaaatatcttgcagagcaaaaggatgatttgggattgactcaaagaagttgcactagtcatgaaggtgtagttagcttgcaatcctcaaaa |
309 |
Q |
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| T |
6838191 |
aggcaagctaaaatatcttgcagagcaaaagggtgatttgggattgacacaaagaagttgcactagttatgaaggcgcggttagcccacaatcctcaaaa |
6838290 |
T |
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| Q |
310 |
agatcgccaacttcatccttggtgaataaatct |
342 |
Q |
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| T |
6838291 |
agatctccaactgcatctttggtggatgaatct |
6838323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 8472482 - 8472184
Alignment:
| Q |
10 |
gcagagacaaagaagtaccataaccaacgtgtgaagaaatggtttgatactctaaaacatgaggtatatgaagtagatcaattgttggatgagattgata |
109 |
Q |
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| T |
8472482 |
gcagagacaaagaagtaccagaaccaaaatgttaagaattggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagtttgata |
8472383 |
T |
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| Q |
110 |
caaatgtaaaactcaagagcaaggatatgttgggatcaaaggttaaatactggctttcagctatcacaaatccatttgaatctaggatcaaagagttgct |
209 |
Q |
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| T |
8472382 |
caagtgtacaacgaaagagc------------------aaggttcaacacttcctttcagctttcattaatcgatttgaatctaggatcagagattcgct |
8472301 |
T |
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| Q |
210 |
aggcaagctaaaatatcttgcagagcaaaaggatgatttgggattgactcaaagaagttgcactagtcatgaaggtgtagttagcttgcaatcctcaaaa |
309 |
Q |
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| T |
8472300 |
agatgaactaaaacttcttgccgatcaaaaggatgtgttgggattaacacagagaagtttccctagttatgaaggtgcagttagcctgcaatcctcgaaa |
8472201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 5250954 - 5250875
Alignment:
| Q |
164 |
tttcagctatcacaaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggat |
243 |
Q |
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| T |
5250954 |
tttcatctttcactaatccatttgaatctaggattaaagaattgctagagaagctagaatttcttgcaaagcaaaaggat |
5250875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 6448040 - 6448106
Alignment:
| Q |
178 |
aatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggatg |
244 |
Q |
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| T |
6448040 |
aatccatttgaatctaggatcaaagacttgctaaagaatctagattatcttgcagagcaaaaggatg |
6448106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 342
Target Start/End: Original strand, 8568209 - 8568370
Alignment:
| Q |
178 |
aatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggatgatttgggattgactcaaagaagttgcactagtc |
277 |
Q |
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| T |
8568209 |
aatcgatttgaatctaggatcaaagatttgttagacacgctaaaattgcttgctcatcaaaaggatgtgctgggattgaaccaaagagcctgtactag-- |
8568306 |
T |
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| Q |
278 |
atgaaggtgtagttagcttgcaatcctcaaaaagatcgccaacttcatccttggtgaataaatct |
342 |
Q |
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|||||||| ||||| ||| ||||||||||||||| ||||||| | || |||||| || ||||| |
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| T |
8568307 |
-tgaaggtgcggttagattgaaatcctcaaaaagattgccaactgcgtctttggtggatgaatct |
8568370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 4388195 - 4388260
Alignment:
| Q |
178 |
aatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggat |
243 |
Q |
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| T |
4388195 |
aatccatttgaatctaggatcaaagaattgctagagaagttagaatttcttgcgaagcaaaaggat |
4388260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 5268832 - 5268765
Alignment:
| Q |
173 |
tcacaaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaag |
240 |
Q |
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| T |
5268832 |
tcactaatccatttgagtctaggatcaaagaattgctagagaagctagaatttcttgcaaaacaaaag |
5268765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 6572403 - 6572506
Alignment:
| Q |
10 |
gcagagacaaagaagtaccataaccaacgtgtgaagaaatggtttgatactctaaaacatgaggtatatgaagtagatcaattgttggatgagattgata |
109 |
Q |
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||||||||||| ||||||| |||| | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6572403 |
gcagagacaaaacagtaccaaaacccaaacgtgaagatttggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagattgcta |
6572502 |
T |
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| Q |
110 |
caaa |
113 |
Q |
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|||| |
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| T |
6572503 |
caaa |
6572506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 342
Target Start/End: Original strand, 6572561 - 6572720
Alignment:
| Q |
186 |
tgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaaggatgatttgggattgactcaaag---aagttgcactagtcatgaa |
282 |
Q |
| |
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|||| |||||||||| || ||||| | ||| ||||||| ||| | |||||||||||||| ||||||||||| || |||||||| |||| |||| |
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| T |
6572561 |
tgaacctaggatcaatgatttgctcgacaaactaaaatttctcgtagagcaaaaggatgtgttgggattgacaggtagtggaagttgcagtagttttgaa |
6572660 |
T |
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| Q |
283 |
ggtgtagttagcttgcaatcctcaaaaagatcgccaacttcatccttggtgaataaatct |
342 |
Q |
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|||| ||||||| ||||||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
6572661 |
ggtgcagttagccagcaatcctcaaaaagatcgccaactgcatctctggtggataaatct |
6572720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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