View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5584_low_19 (Length: 332)
Name: NF5584_low_19
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_19 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0018 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 186943 - 186627
Alignment:
| Q |
16 |
atgcaggaattgagtgatcggagtgaattcgaattccttagaagttagaactaaatttgagaattgagggtcgaagcatcttgaaacattttttcgaaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
186943 |
atgcaggaattgagtgatcggagtgaattcgaattccttagaagttagaactatatttgagaattgagggtcgaagcatcttgaaacattttttcgaaca |
186844 |
T |
|
| Q |
116 |
ttatataagaaggataaactacaaatggtgtgttcattccgacatatattaatacaaaacaagtttacatcttttagacattctcagccaatgtctgatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
186843 |
ttatataagaaggataaactacaaatggtgtgttcattccgacatatattaatacaaaacaagtttacatcttttagacattctcagccaatgtctgatc |
186744 |
T |
|
| Q |
216 |
agaagacttagcattatcaaagtcaggagatgtctctaatttgcgctttctttcgggatataacacgtaatgttggatgatgaagaggatgtcaaagaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
186743 |
agaagacttagcattatcaaagtcaggagatgtctctaatttgcgctttctttcgggatataacacgtaatgttggatgatgaagaggatgtcaaagaat |
186644 |
T |
|
| Q |
316 |
atagacacctgcaatgt |
332 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
186643 |
atagacacctgcaatgt |
186627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University