View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_20 (Length: 312)
Name: NF5584_low_20
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 53869641 - 53869387
Alignment:
| Q |
1 |
gcacatatgtaatatgattatatatgctacaacgccacaaaggaagacaacagaatacaatattattttcctgacaatctgttattacacttgaaagtga |
100 |
Q |
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| T |
53869641 |
gcacatatgtaatatgattatatatgctacaacgccacaaaggaagacaacagaatacaatattattttcctgacaatctgttattacacttgaaagtga |
53869542 |
T |
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| Q |
101 |
aaatgttgtgataagagttgaaagttgaaactgaataattataaagcttaacaaatcaatcatagttatggaagctagatattgatgggtaaacaatttg |
200 |
Q |
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| T |
53869541 |
aaatgttgtgataagagttgaaagttgaaactgaataattataaagcttaacaaatcaatcatagctatggaagctagatattgatgggtaaacaatttg |
53869442 |
T |
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| Q |
201 |
tactgccaggcatttaactcactagtgtgggaaattgaattgatgacttaaacca |
255 |
Q |
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| T |
53869441 |
tactgccaggcatttaactcactagtgtgggaaattgaattgatgacttaaacca |
53869387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 15443115 - 15443051
Alignment:
| Q |
247 |
cttaaaccatttttaataaaaagaaaattagagatgaaaatccaaaaattccaaagggaaagagac |
312 |
Q |
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| T |
15443115 |
cttaaaccatttttaataaaaagaaaattagaaatggaaatccaaaaa-tccaaagggaaagagac |
15443051 |
T |
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