View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_22 (Length: 295)
Name: NF5584_low_22
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 15794577 - 15794842
Alignment:
| Q |
13 |
tgaaatgggctaaaagtctttggaatttctaatgaaccttctaacatttttacaacatcactcatcataggccttaattcttgcctatattgaacacacc |
112 |
Q |
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| T |
15794577 |
tgaaatgggttaaaagtctttggaatttctaatgaaccttccaacattttcacaacatcactcatcataggccttaattgttgcctatattgaacacacc |
15794676 |
T |
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| Q |
113 |
ataaagctaccttaaccattctctcagcaatctcaatatttttctcttctattccacaaactatcattgcctcctccaatagtccagcatcaaatttttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15794677 |
ataaagctaccttaaccattctctcagcaatctctctatttttctcttctattccacaaactatcattgcctcctccaatagtccagcatcaaatttttt |
15794776 |
T |
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| Q |
213 |
ccaaacccaaattggaaaccactcttggctttctgtatttttaatgtcaaggtttcttctcctacc |
278 |
Q |
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| T |
15794777 |
ccaaacccaaattggaaaccactcttggctttctgtatttttaatgtcaaggtttcttctcctacc |
15794842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 15773391 - 15773125
Alignment:
| Q |
13 |
tgaaatgggctaaaagtctttggaatttctaatgaaccttctaacatttttacaacatcactcatcataggccttaattcttgcctatattgaacacacc |
112 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
15773391 |
tgaaatgggttaaaagtctttggaatttctaatgaaccttctaacattttcaccacaacactcattataggccttaattctggcctatattgaacacacc |
15773292 |
T |
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| Q |
113 |
ataaagctaccttaaccattctctcagcaatctcaatatttttctcttctattccacaaactatcattgcctcctccaatagtccagcatcaaatttttt |
212 |
Q |
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| T |
15773291 |
ataaagctaccttaatcattctctcagcaatctctttatttttctcttctattccacaaactatcattgcctcccccaaaagtccagcatcttttttttt |
15773192 |
T |
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| Q |
213 |
ccaaacccaaattggaaaccactcttggctttctgtatttttaatgtcaaggtttcttctcctacct |
279 |
Q |
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| T |
15773191 |
ccaaacccaaattggaaaccactcttggctttcagtgtttttaatggcaaggtttcttctcctacct |
15773125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 247
Target Start/End: Complemental strand, 15768748 - 15768526
Alignment:
| Q |
25 |
aaagtctttggaatttctaatgaaccttctaacatttttacaacatcactcatcataggccttaattcttgcctatattgaacacaccataaagctacct |
124 |
Q |
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| T |
15768748 |
aaaggctttgaaatttcaactaaaccttccaacatttgtaccacaacactcattttaggtcttgattctggcctatattgaacacatgccaaagctacct |
15768649 |
T |
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| Q |
125 |
taaccattctctcagcaatctcaatatttttctcttctattccacaaactatcattgcctcctccaatagtccagcatcaaattttttccaaacccaaat |
224 |
Q |
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| T |
15768648 |
taaccattctctctacaatctccatatttttctcctctatcccacaagctgctaccaattcattcacttgttcagcatcgaattttttccaaacccatat |
15768549 |
T |
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| Q |
225 |
tggaaaccactcttggctttctg |
247 |
Q |
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|||||||| ||||||||||||| |
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| T |
15768548 |
cggaaaccattcttggctttctg |
15768526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 15789322 - 15789249
Alignment:
| Q |
99 |
atattgaacacaccataaagctaccttaaccattctctcagcaatctcaatatttttctcttctattccacaaa |
172 |
Q |
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|||||||||||||||| ||| ||||| | |||||||||||| ||||| ||| ||||||||| |||||||||| |
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| T |
15789322 |
atattgaacacaccattgagcaacctttaacattctctcagctttctcagtatctttctcttcaattccacaaa |
15789249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 15793520 - 15793447
Alignment:
| Q |
99 |
atattgaacacaccataaagctaccttaaccattctctcagcaatctcaatatttttctcttctattccacaaa |
172 |
Q |
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||||||||||||||||| ||| ||||| | ||||||||| || |||||| ||| ||||||||| ||| |||||| |
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| T |
15793520 |
atattgaacacaccatagagcaacctttaacattctctctgctatctcactatctttctcttcaatttcacaaa |
15793447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 15778604 - 15778673
Alignment:
| Q |
103 |
tgaacacaccataaagctaccttaaccattctctcagcaatctcaatatttttctcttctattccacaaa |
172 |
Q |
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||||||||||||| ||| ||||| | ||||||||| || |||||| ||| ||||||||| | |||||||| |
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| T |
15778604 |
tgaacacaccatagagcaaccttcaacattctctctgctatctcattatctttctcttcaactccacaaa |
15778673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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