View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_30 (Length: 258)
Name: NF5584_low_30
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_30 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 37768052 - 37767813
Alignment:
| Q |
19 |
caaggtaatttaatttggttgtgagagtgagtgaggcttctaaaagatgactaaaggcggaataggcaaagagaactttgggggtacccgtgaaggacag |
118 |
Q |
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| T |
37768052 |
caaggtaatttaatttggttgtgagagtgagtgaggcttctaaaagatgactaaaggcggaataggcaaagagaactttgggggtacccgtgaaggacag |
37767953 |
T |
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| Q |
119 |
gtaagtactggtgatatggatgtcattttgcaattaaatctattaactagggatgattcttacctatcataagcacaaatccaaatcattcgaacccatg |
218 |
Q |
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| T |
37767952 |
gcaagtactggtgatatggatgtcattttgcaattaaatctaataactagggatgattcttacctatcataagcacaaatccaaatcattcgaacccatg |
37767853 |
T |
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| Q |
219 |
atctttattaagttaaagaaatgatatttgtacaaccact |
258 |
Q |
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| T |
37767852 |
atctttattaagttagagaaatgatatttatacaaccact |
37767813 |
T |
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