View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_34 (Length: 251)
Name: NF5584_low_34
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_34 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 24788589 - 24788830
Alignment:
| Q |
10 |
attattctagatgatggtctgattgattacaatattattttttacgactagttgcttttagaattgaatcactgtcctctggtacaggaaaagacaattg |
109 |
Q |
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| T |
24788589 |
attattctagatgatggtctgattgattacaatattatttttaacgactagttgcttttagaattgaatcactgtcctctggtacaggaaaagacaattg |
24788688 |
T |
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| Q |
110 |
gttctgcggcacctgttaatgggcaaacaaaagttaaatcatgtacacgaaaagggtccaagggtaagagacttctgaggaagagccttgcaggtttgta |
209 |
Q |
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| T |
24788689 |
gttctgcggcacctgttaatgggcaaacaatagttaaatcatgtatgcgaaaagggtccaagggtaagagacttctgaggaagagccttgcaggtttgta |
24788788 |
T |
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| Q |
210 |
cttcccaattatttcatattctcgttcgttaattttaaagat |
251 |
Q |
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| T |
24788789 |
cttcccaattatctcatattctcgttcgttaattttaaagat |
24788830 |
T |
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Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 24300682 - 24300513
Alignment:
| Q |
11 |
ttattctagatgatggtctgattgattacaatattattttttacgactagtt--gcttttagaattgaatcactgtcctctggtacaggaaaagacaatt |
108 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| ||||| |||| |||||||||| ||| || |
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| T |
24300682 |
ttattctagatgttggtctgattgatgccaatattatttttttcggctagttttgcttttagaattgaatccctgtcttctgatacaggaaaacacagtt |
24300583 |
T |
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| Q |
109 |
ggttctgcggcacctgttaatgggcaaacaaaagttaaatcatgtacacgaaaagggtccaagggtaaga |
178 |
Q |
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||||||| |||||||||||||||||||| | ||||||| |||| ||| |||| |||||||||||||| |
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| T |
24300582 |
ggttctgtggcacctgttaatgggcaaaagagagttaaagtatgtgcacagaaagtgtccaagggtaaga |
24300513 |
T |
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