View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5584_low_39 (Length: 243)
Name: NF5584_low_39
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 46703021 - 46702814
Alignment:
| Q |
20 |
tacattttaaaatttagacttggcccttctaagtcctcctccccacaataaccaaaaagacctaacttactcgtcccgcacacaccactctcattatatt |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46703021 |
tacattttaaaatttagacttgtcccttctaagtcctcctcccctcaataaccaaaaagacctaacttactcgtcccgcacacaccactctcattatatt |
46702922 |
T |
|
| Q |
120 |
ccccattacactcgtaactaactggacaattcaacagcctatttaatttcttctctgttcttggtcttgctcctcctatcatagattctatattttgaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46702921 |
ccccattacactcgtaactaactggacaattcaacagcctatttaatttcttctctgttcttggtcttgctcctcctatcatagattctatattttgaac |
46702822 |
T |
|
| Q |
220 |
catggatg |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
46702821 |
catggatg |
46702814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University