View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_4 (Length: 570)
Name: NF5584_low_4
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 44459528 - 44460084
Alignment:
| Q |
1 |
catgcctacacctttgatcacaaacatgaagttgagcactttggtaaaatgtctcgcattcttgataagatttctgaattacatcttttagtttctacta |
100 |
Q |
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| T |
44459528 |
catgcctacacctttgatcacaaacatgaagttgagcactttggtaaaatgtctcgcattcttgataagatttctgaattacatcttttagtttctacta |
44459627 |
T |
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| Q |
101 |
ctgattcaaagataagggacaagagagtgctaaggcgtcatcatttaatcaggaagctgcaagaaaggtgcaaatcaatgcataagttactttctgatca |
200 |
Q |
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| T |
44459628 |
ctgattcaaagataagggacaagagagtgctaaggcgtcatcatttaatcaggaagctgcaagaaaggtgcaaatcaatgcataagttactttctgatca |
44459727 |
T |
|
| Q |
201 |
tataaaccgcgaggaaatagaaatttggcctataattagagaattcttctcgaaccgggagcaagggaagatcataggatgcatacttggaagaataagt |
300 |
Q |
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| T |
44459728 |
tataaaccgcgaggaaatagaaatttggcctataattagagaattcttctcgaaccgggagcaagggaagatcatagggtgcatacttggaagaataagt |
44459827 |
T |
|
| Q |
301 |
gcagaaatattacaagatatgataccttggctaatggcatctttaacacaggaagaacaacatgttttaatgttcttatggtccatggctactaagaata |
400 |
Q |
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| T |
44459828 |
gcagaaatattacaagatatgataccttggctaatggcatctttaacacaggaagaacaacatgttttaatgttcttatggtccatggctactaagaata |
44459927 |
T |
|
| Q |
401 |
caatgtttgatgaatggttaggtgaatggtggaatgggtacagtgtagctaaggcagcagatggatcaaatgatgcccctctacagaatgttgagccact |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459928 |
caatgtttgatgaatggttaggtgaatggtggaatgggtacagtgtagctaaggcagcagatggatcaaatgatgcccctctacagaatgttgagccact |
44460027 |
T |
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| Q |
501 |
ggaaattatatccaaatatttgtcagaagaggttcttaatgcattacaagaataatc |
557 |
Q |
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| T |
44460028 |
ggaaattatatccaaatatttgtcagaagaggttcttaatgcattacaagaagaatc |
44460084 |
T |
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