View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_40 (Length: 243)
Name: NF5584_low_40
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_40 |
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| [»] scaffold0577 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 35209961 - 35210183
Alignment:
| Q |
5 |
atgagagacccgtttgacccatgatatcacgcaaatacttctaatctaacctgtcataagatttactaatatccaacttaagagaaacttcacttttctt |
104 |
Q |
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| T |
35209961 |
atgagaaacccgtttgacccatgatatcatgcaaatacttctaatctaatctgtcataagatttactaatatccaacttaagagaaacttcatttttctt |
35210060 |
T |
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| Q |
105 |
tcctttagctattgccttcatttatataaatgttggcaaataaattgaaggtatttcaagagacgatgatttctgaaaaccaaactattcatgatagaca |
204 |
Q |
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| T |
35210061 |
tcctttagctattgccttcatttatataaatgttggcgaataaattgaaggtatttcaagagacgatgatttctgaaaaccaaactattcatgatagaca |
35210160 |
T |
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| Q |
205 |
acttttagaaggagcgttacttg |
227 |
Q |
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| T |
35210161 |
acttttagaaggagcgttacttg |
35210183 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 29508224 - 29508116
Alignment:
| Q |
17 |
tttgacccatgatatcacgcaaatacttctaatctaacctgtcataagatttactaatatccaacttaagagaaacttcacttttctttcctttagctat |
116 |
Q |
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| T |
29508224 |
tttgacctatgatatgacgcatatattcccaatctaacttgtcataagctttgataatatccagcttaagagcaacatcacctttctttcctttagtttt |
29508125 |
T |
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| Q |
117 |
tgccttcat |
125 |
Q |
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| T |
29508124 |
tgccttcat |
29508116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 4524 - 4602
Alignment:
| Q |
47 |
aatctaacctgtcataagatttactaatatccaacttaagagaaacttcacttttctttcctttagctattgccttcat |
125 |
Q |
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| T |
4524 |
aatctaatctatcataagctttactaatatccaacttaagtgtaacatctccactctttcctttagcctttgccttcat |
4602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 14492859 - 14492896
Alignment:
| Q |
49 |
tctaacctgtcataagatttactaatatccaacttaag |
86 |
Q |
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| T |
14492859 |
tctaacctgtcatatggtttactaatatccaacttaag |
14492896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 51194165 - 51194285
Alignment:
| Q |
5 |
atgagagacccgtttgacccatgatatcacgcaaatacttctaatctaacctgtcataagatttactaatatccaacttaagagaaacttcacttttctt |
104 |
Q |
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|||||| |||| ||||| ||||||||| || | ||| ||| |||||| || ||||||| ||||||||| ||||||||||| | ||| || | |||| |
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| T |
51194165 |
atgagaaacccatttgaatcatgatatctcgtagataattccaatctagtctatcataagctttactaatgtccaacttaagtgcaacatccccactctt |
51194264 |
T |
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| Q |
105 |
tcctttagctattgccttcat |
125 |
Q |
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| T |
51194265 |
tcctttagcctttgccttcat |
51194285 |
T |
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