View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_44 (Length: 239)
Name: NF5584_low_44
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_44 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 10114429 - 10114650
Alignment:
| Q |
18 |
gaaagacaaggacaactaccaacaaatgtcagttgtgattcaaatttggtgcaagaggttctcaatttcttaaactagattttgttccaagaaagacaat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10114429 |
gaaagacaaggacaactaccaacaaatgtcagttgtgattctaatttggtgcaagaggttctcaatttcttaaactagattttgttccaagaaagacaat |
10114528 |
T |
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| Q |
118 |
tgttgcgtcttaggtccttgagcaaataatttcactttgtgtacttcttttcattttaattccagcaattgttgtctcttcaatttaaaaatttattttg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10114529 |
tgttgcatcttaggtccttgagcaaataatttcactttgtgtacttcttttcattttaattccagcaattgttgtctcttcaatttaaaaatttattttg |
10114628 |
T |
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| Q |
218 |
tgggataatatgaatatcatga |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
10114629 |
tgggataatatgaatatcatga |
10114650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 33021349 - 33021128
Alignment:
| Q |
18 |
gaaagacaaggacaactaccaacaaatgtcagttgtgattcaaatttggtgcaagaggttctcaatttcttaaactagattttgttccaagaaagacaat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33021349 |
gaaagacaaggacaactaccaacaaatgtcagttgtgattctaatttggtgcaagaggttctcaatttcttaaactagattttgttccaaaaaagacaat |
33021250 |
T |
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| Q |
118 |
tgttgcgtcttaggtccttgagcaaataatttcactttgtgtacttcttttcattttaattccagcaattgttgtctcttcaatttaaaaatttattttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33021249 |
tgttgcgtcttaggtccttgagcaaataatttcactttgtgtacttcttttcattttaattccagcaattgttgtctcttcaatttaaaaatttattttg |
33021150 |
T |
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| Q |
218 |
tgggataatatgaatatcatga |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
33021149 |
tgggataatatgaatatcatga |
33021128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 27025576 - 27025355
Alignment:
| Q |
18 |
gaaagacaaggacaactaccaacaaatgtcagttgtgattcaaatttggtgcaagaggttctcaatttcttaaactagattttgttccaagaaagacaat |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27025576 |
gaaagacaaggacaactaccaacaaatgtcagttgtgattttaatttggtgcaagaggttctcaatttcttaaactagattttgttccaataaagacaat |
27025477 |
T |
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| Q |
118 |
tgttgcgtcttaggtccttgagcaaataatttcactttgtgtacttcttttcattttaattccagcaattgttgtctcttcaatttaaaaatttattttg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025476 |
tgttgcttcttaggtccttgagcaaataatttcactttgtgtacttcttttcattttaattccagcaattgttgtctcttcaatttaaaaatttattttg |
27025377 |
T |
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| Q |
218 |
tgggataatatgaatatcatga |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
27025376 |
tgggataatatgaatatcatga |
27025355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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