View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_45 (Length: 239)
Name: NF5584_low_45
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 53868898 - 53869092
Alignment:
| Q |
22 |
tgtatatatcttactaaatattcctcatggaggtcatcatctgaactccttgtagaaattgctcgtcacggagaagataatggctttgaggtgccttgcc |
121 |
Q |
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| T |
53868898 |
tgtatatatcttactaaatattcctcatggaggtcatcatctgaactccttgtagaaattgctcgtcacggagaagataatggctttgaggtgccttgcc |
53868997 |
T |
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| Q |
122 |
ttatagttgcagctaaagatgaacaggattcatttccaatggctacacaagagttaactagggaatttttcatggacttattcatttggatgata |
216 |
Q |
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| T |
53868998 |
ttatagttgcagctaaagatgaacaggattcatttccaatggctacacaagagttaactagggtatttttcatggacttattcatttggatgata |
53869092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 51365627 - 51365480
Alignment:
| Q |
43 |
tcctcatggaggtcatcatctgaactccttgtagaaattgctcgtcacggagaagataatggctttgaggtgccttgccttatagttgcagctaaagatg |
142 |
Q |
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| T |
51365627 |
tcctcatggaaggcatcgtctaaactccttgtagaaattgctcgtcatggagaacatactggctttaaggtgccctgccttatagttgcagctaaagatg |
51365528 |
T |
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| Q |
143 |
aacaggattcatttccaatggctacacaagagttaactagggaatttt |
190 |
Q |
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| T |
51365527 |
accagtattcatttccaatggctgtacaagagtcaactagggtatttt |
51365480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 54158340 - 54158171
Alignment:
| Q |
43 |
tcctcatggaggtcatcatctgaactccttgtagaaattgctcgtcacggagaagataatggctttgaggtgccttgccttatagttgcagctaaagatg |
142 |
Q |
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| T |
54158340 |
tcctcatggagggcatcatctaaacttcttgtagatattgctgctcatggagaagattctggctttgaggtgccttgccttatagttgctgctaaagatg |
54158241 |
T |
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| Q |
143 |
aacaggattcatttccaatggctacacaagagttaactagggaatttttcatggacttattcatttggat |
212 |
Q |
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| T |
54158240 |
accaggtttcatttacaatggctgcacaagagtctactagggtaattttcattaacttattaatttggat |
54158171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 36877242 - 36877384
Alignment:
| Q |
79 |
attgctcgtcacggagaagataatggctttgaggtgccttgccttatagttgcagctaaagatgaacaggattcatttccaatggctacacaagagttaa |
178 |
Q |
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| T |
36877242 |
attgctggtcatggagaaaatactggctatgaggtgccctgtcttatagttgcagctaaggatgatctggatccatttgcattggctatacaagagtcaa |
36877341 |
T |
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| Q |
179 |
ctagggaatttttcatggacttattcatttggatgataatata |
221 |
Q |
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| T |
36877342 |
ctagggtatttttcgttaacttattaatttgcatgatcatata |
36877384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 15014768 - 15014588
Alignment:
| Q |
41 |
attcctcatggaggtcatcatctgaactccttgt-agaaattgctcgtcacggagaagataatggctttgaggtgccttgccttatagttgcagctaaag |
139 |
Q |
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|||| ||||||| | |||||||||||||| |||| | |||||||| |||| |||||||| | |||||| ||||||| || |||| |||||||| ||| | |
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| T |
15014768 |
attcttcatggaagacatcatctgaactc-ttgtcaaaaattgctggtcatggagaagacaccggctttcaggtgccctgtcttacagttgcagttaatg |
15014670 |
T |
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| Q |
140 |
atgaacaggattcatttccaatggctacacaagagttaactagggaatttttcatggacttattcatttggatgataatata |
221 |
Q |
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| T |
15014669 |
atgatcaggattcatttacaatggctatacaagagacaactatggtatttttcattattttattcatttgaatgatcatata |
15014588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 14773349 - 14773211
Alignment:
| Q |
56 |
catcatctgaactccttgtagaaattgctcgtcacggagaagataatggctttgaggtgccttgccttatagttgcagctaaagatgaacaggattcatt |
155 |
Q |
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| T |
14773349 |
catcatctgaactcttgttaaaaattgctcgtcatggagaagacactggttttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatt |
14773250 |
T |
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| Q |
156 |
tccaatggctacacaagagttaactagggaatttttcat |
194 |
Q |
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| T |
14773249 |
tacaatggctatccaagaggcaactatggtatttttcat |
14773211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 15047482 - 15047407
Alignment:
| Q |
88 |
cacggagaagataatggctttgaggtgccttgccttatagttgcagctaaagatgaacaggattcatttccaatgg |
163 |
Q |
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| T |
15047482 |
cacggggaagatactggctttcaggtgccttgtcttatggtagcagctaaagatgataaagattcatttacaatgg |
15047407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 17879738 - 17879632
Alignment:
| Q |
102 |
tggctttgaggtgccttgccttatagttgcagctaaagatgaacaggattcatttccaatggctacacaagagttaactagggaatttttcatggactta |
201 |
Q |
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| T |
17879738 |
tggctttgagatgccttgtcttatggtggcagctaaagatgataaggattcatttacaatgggtatacgagaaacgactggggtatttttcattaactta |
17879639 |
T |
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| Q |
202 |
ttcattt |
208 |
Q |
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| T |
17879638 |
ttcattt |
17879632 |
T |
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