View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5584_low_48 (Length: 228)

Name: NF5584_low_48
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5584_low_48
NF5584_low_48
[»] chr5 (4 HSPs)
chr5 (5-228)||(24866851-24867076)
chr5 (169-226)||(39643221-39643278)
chr5 (101-221)||(5971818-5971937)
chr5 (173-215)||(42935982-42936024)
[»] chr6 (4 HSPs)
chr6 (45-119)||(21394231-21394305)
chr6 (45-122)||(19121829-19121908)
chr6 (48-131)||(9530527-9530610)
chr6 (45-119)||(21969302-21969376)
[»] chr4 (2 HSPs)
chr4 (67-213)||(54458702-54458847)
chr4 (45-122)||(16977293-16977370)
[»] chr1 (5 HSPs)
chr1 (57-124)||(8792956-8793023)
chr1 (46-132)||(46410838-46410924)
chr1 (101-216)||(30570141-30570251)
chr1 (68-122)||(6219775-6219829)
chr1 (194-228)||(23399579-23399613)
[»] chr7 (3 HSPs)
chr7 (43-119)||(12427808-12427884)
chr7 (171-215)||(16953231-16953275)
chr7 (45-89)||(24451976-24452020)
[»] chr3 (6 HSPs)
chr3 (169-216)||(40472930-40472977)
chr3 (160-226)||(20124204-20124270)
chr3 (57-143)||(31300370-31300455)
chr3 (57-122)||(45965829-45965894)
chr3 (74-122)||(3910237-3910285)
chr3 (48-132)||(55447197-55447281)
[»] chr2 (1 HSPs)
chr2 (36-119)||(22191542-22191625)
[»] scaffold0340 (1 HSPs)
scaffold0340 (185-215)||(10937-10967)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 24867076 - 24866851
Alignment:
Q  5 aagcaccataaatgttacttaaaattaagttaaaatactagagtaaaccacaaaattggtcattgtctttgtaagccactctcaatatagtttctaactc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  24867076 aagcaccataaatgttacttaaaattaagttaaaatactagagtaaaccacaaaattgatcattgtcttggtaagccactctcaatatagtttctaactc 24866977  T
Q  105 tattaatattttaaactaatatctgtctcttgtcaaaaata--tttcaagtaagacactcgttacatgacaaaaacaaaaagacataaatttaattgaga 202  Q
    ||||||||||| |||||||||||||||||||||||||||||  | |||| || |||||||||||  ||||||||| |||| ||||||||||||||||| |    
T  24866976 tattaatatttcaaactaatatctgtctcttgtcaaaaatatctctcaattatgacactcgttatgtgacaaaaataaaatgacataaatttaattgaaa 24866877  T
Q  203 aacttttgacaaaatcaatgactaat 228  Q
    ||||||| ||||| ||||||||||||    
T  24866876 aacttttaacaaagtcaatgactaat 24866851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 39643221 - 39643278
Alignment:
Q  169 tgacaaaaacaaaaagacataaatttaattgagaaacttttgacaaaatcaatgacta 226  Q
    ||||||||||| | |||||||||| ||||||| ||||||||||||||| |||||||||    
T  39643221 tgacaaaaacatagagacataaatctaattgaaaaacttttgacaaaaacaatgacta 39643278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 5971937 - 5971818
Alignment:
Q  101 actctattaatattttaaactaatatctgtctcttgtcaaaaatatttcaagtaagacactcgttacatgacaaaaacaaaaagacataaatttaattga 200  Q
    |||||||||||||||||||||| |   ||||| ||||||||| | | |||| |||| || | ||||  ||||||||||| ||||||||| | |||||| |    
T  5971937 actctattaatattttaaactagtcattgtct-ttgtcaaaactttctcaattaagccatttgttatgtgacaaaaacataaagacatagacttaattca 5971839  T
Q  201 gaaacttttgacaaaatcaat 221  Q
     ||||||||||||||| ||||    
T  5971838 aaaacttttgacaaaaacaat 5971818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 42936024 - 42935982
Alignment:
Q  173 aaaaacaaaaagacataaatttaattgagaaacttttgacaaa 215  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||    
T  42936024 aaaaacataaagacataaacttaattgagaaacttttaacaaa 42935982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 21394231 - 21394305
Alignment:
Q  45 gagtaaaccacaaaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaa 119  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||  ||||   |||||||||||||||||||||    
T  21394231 gagtaaaccaccaaattagtcactgtctttgtaagccactctcaaattagtcattaactctattaatattttaaa 21394305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 19121829 - 19121908
Alignment:
Q  45 gagtaaaccacaaaattggtcatt--gtctttgtaagccactctcaatatagtttctaactctattaatattttaaacta 122  Q
    ||||||||||| |||||||||  |  |||||||||||||||||||||  ||||  |||||||||||||||||||||||||    
T  19121829 gagtaaaccaccaaattggtctctctgtctttgtaagccactctcaaactagtcgctaactctattaatattttaaacta 19121908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 9530527 - 9530610
Alignment:
Q  48 taaaccacaaaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaactaatatctgtc 131  Q
    |||||||  |||||||||  |||||||||||| || ||||||  |||| ||||||| ||||||||||| |||||| | ||||||    
T  9530527 taaaccattaaattggtctctgtctttgtaagtcattctcaaattagtctctaactttattaatatttcaaactagtctctgtc 9530610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 21969376 - 21969302
Alignment:
Q  45 gagtaaaccacaaaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaa 119  Q
    |||||||| | ||||||||||||| ||||||||||  | ||||||  |||| ||| |||| ||||||||||||||    
T  21969376 gagtaaactataaaattggtcattatctttgtaagtgaatctcaaattagtctctgactcaattaatattttaaa 21969302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 213
Target Start/End: Complemental strand, 54458847 - 54458702
Alignment:
Q  67 ttgtctttgtaagccactctcaatatagtttctaactctattaatattttaaactaatatctgtctcttgtcaaaaatatttcaagtaagacactcgtta 166  Q
    ||||||||||| |||||||| ||  || | || |||||||||||||||| |||||||||||||||| ||||||||| | | || | || | | |||||||    
T  54458847 ttgtctttgtaggccactcttaaattaatctcaaactctattaatatttcaaactaatatctgtct-ttgtcaaaagtgtctcgattaggtccctcgtta 54458749  T
Q  167 catgacaaaaacaaaaagacataaatttaattgagaaacttttgaca 213  Q
      |||||||||||  ||||||   || ||||||||||||||||||||    
T  54458748 tgtgacaaaaacattaagacaaggatctaattgagaaacttttgaca 54458702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 16977370 - 16977293
Alignment:
Q  45 gagtaaaccacaaaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaacta 122  Q
    ||||||||||  ||||||| |||||||| ||||||||||| ||||  |||| |   ||||||||||||||| ||||||    
T  16977370 gagtaaaccatcaaattggccattgtctctgtaagccactttcaaattagtcttcgactctattaatatttaaaacta 16977293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 8792956 - 8793023
Alignment:
Q  57 aaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaactaat 124  Q
    |||||| |||||||||||||||| |||||||||  |||| || |||||||||||||||| ||| ||||    
T  8792956 aaattgatcattgtctttgtaagtcactctcaaattagtctccaactctattaatatttcaaaataat 8793023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 46410924 - 46410838
Alignment:
Q  46 agtaaaccacaaaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaactaatatctgtct 132  Q
    |||||||||| |||||||||||||||||||||||  | ||||||| |||| | | |||||| |||||||| ||| || | |||||||    
T  46410924 agtaaaccaccaaattggtcattgtctttgtaagtgattctcaatttagtctatgactctaataatatttcaaaatagtctctgtct 46410838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 30570141 - 30570251
Alignment:
Q  101 actctattaatattttaaactaatatctgtctcttgtcaaaaatatttcaagtaagacactcgttacatgacaaaaacaaaaagacataaatttaattga 200  Q
    |||||||| |||||||||| ||||     ||| ||||||||| | | |||| |||| || |||||| |||||||||||| |||||||   || |||||||    
T  30570141 actctattcatattttaaattaat-----tcttttgtcaaaagtttctcaattaagtcattcgttatatgacaaaaacataaagacagcgatctaattga 30570235  T
Q  201 gaaacttttgacaaaa 216  Q
     |||||||||||||||    
T  30570236 taaacttttgacaaaa 30570251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 6219829 - 6219775
Alignment:
Q  68 tgtctttgtaagccactctcaatatagtttctaactctattaatattttaaacta 122  Q
    ||||||||||||||| ||||||    || ||||||||||||||||||||||||||    
T  6219829 tgtctttgtaagccattctcaaatctgtctctaactctattaatattttaaacta 6219775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 23399613 - 23399579
Alignment:
Q  194 taattgagaaacttttgacaaaatcaatgactaat 228  Q
    ||||||||||||||||||||||| |||||||||||    
T  23399613 taattgagaaacttttgacaaaaacaatgactaat 23399579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 12427808 - 12427884
Alignment:
Q  43 tagagtaaaccacaaaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaa 119  Q
    ||||||||| ||  |||||||||| |||||||||||| || ||||||  |||||  | |||||||||||||||||||    
T  12427808 tagagtaaatcattaaattggtcactgtctttgtaagtcattctcaaattagttcatgactctattaatattttaaa 12427884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 16953275 - 16953231
Alignment:
Q  171 acaaaaacaaaaagacataaatttaattgagaaacttttgacaaa 215  Q
    ||||||||| |||||||| ||| ||||||| ||||||||||||||    
T  16953275 acaaaaacataaagacatgaatctaattgacaaacttttgacaaa 16953231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 24452020 - 24451976
Alignment:
Q  45 gagtaaaccacaaaattggtcattgtctttgtaagccactctcaa 89  Q
    ||||||||||  ||||||||| || ||||||||||||||||||||    
T  24452020 gagtaaaccatcaaattggtctttatctttgtaagccactctcaa 24451976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 40472930 - 40472977
Alignment:
Q  169 tgacaaaaacaaaaagacataaatttaattgagaaacttttgacaaaa 216  Q
    ||||||||||| ||||||||| |  |||||||||||||||||||||||    
T  40472930 tgacaaaaacataaagacatatacctaattgagaaacttttgacaaaa 40472977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 20124204 - 20124270
Alignment:
Q  160 ctcgttacatgacaaaaacaaaaagacataaatttaattgagaaacttttgacaaaatcaatgacta 226  Q
    |||||||  ||||||||||| | ||||||  || ||||||| ||||||||||||||| |||||||||    
T  20124204 ctcgttaggtgacaaaaacatagagacatggatctaattgaaaaacttttgacaaaaacaatgacta 20124270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 31300455 - 31300370
Alignment:
Q  57 aaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaactaatatctgtctcttgtcaaaaa 143  Q
    |||||||||||| ||||||||||  | ||||||  |||| | |||||||||| |||||||||| |||| | ||||| ||||||||||    
T  31300455 aaattggtcattatctttgtaagagattctcaaattagtctataactctatttatattttaaattaatttttgtct-ttgtcaaaaa 31300370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 45965894 - 45965829
Alignment:
Q  57 aaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaacta 122  Q
    |||||||||  ||| |||||||| |||||||||  |||||| | ||||||||||||||| ||||||    
T  45965894 aaattggtccctgtatttgtaagtcactctcaaattagtttgtgactctattaatatttcaaacta 45965829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 3910237 - 3910285
Alignment:
Q  74 tgtaagccactctcaatatagtttctaactctattaatattttaaacta 122  Q
    ||||||| ||||||||  ||||  |||||||||||||||||||||||||    
T  3910237 tgtaagctactctcaaattagtccctaactctattaatattttaaacta 3910285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 55447281 - 55447197
Alignment:
Q  48 taaaccacaaaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaactaatatctgtct 132  Q
    |||||||| ||||||||| |||||||||||||  | ||||||   ||| ||| ||||| ||||||||||||| || | |||||||    
T  55447281 taaaccactaaattggtctttgtctttgtaagtgattctcaaatcagtctctgactctcttaatattttaaaatagtctctgtct 55447197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 22191625 - 22191542
Alignment:
Q  36 aaaatactagagtaaaccacaaaattggtcattgtctttgtaagccactctcaatatagtttctaactctattaatattttaaa 119  Q
    ||||| || ||||||||||| || ||| || ||| ||||||||| |||||||||  ||||  || |||||||||||||||||||    
T  22191625 aaaattcttgagtaaaccaccaatttgatccttgcctttgtaagtcactctcaaattagtccctgactctattaatattttaaa 22191542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 215
Target Start/End: Complemental strand, 10967 - 10937
Alignment:
Q  185 acataaatttaattgagaaacttttgacaaa 215  Q
    |||||||||||||||||||||||||||||||    
T  10967 acataaatttaattgagaaacttttgacaaa 10937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University