View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5584_low_54 (Length: 211)

Name: NF5584_low_54
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5584_low_54
NF5584_low_54
[»] chr3 (16 HSPs)
chr3 (101-198)||(29351760-29351857)
chr3 (1-100)||(40496975-40497074)
chr3 (1-102)||(50676675-50676776)
chr3 (1-99)||(51545864-51545962)
chr3 (3-99)||(48169928-48170024)
chr3 (1-99)||(54014439-54014537)
chr3 (1-102)||(41346249-41346350)
chr3 (1-99)||(13542792-13542890)
chr3 (1-72)||(24709212-24709283)
chr3 (8-99)||(30462877-30462967)
chr3 (8-97)||(48737735-48737824)
chr3 (64-102)||(38492049-38492087)
chr3 (66-100)||(50676474-50676508)
chr3 (66-99)||(30459806-30459839)
chr3 (66-99)||(41346047-41346080)
chr3 (66-99)||(54014237-54014270)
[»] chr6 (15 HSPs)
chr6 (8-102)||(28541584-28541678)
chr6 (1-100)||(12350474-12350573)
chr6 (1-99)||(16435981-16436075)
chr6 (1-82)||(29182793-29182874)
chr6 (1-107)||(13042173-13042278)
chr6 (1-102)||(1241310-1241411)
chr6 (8-99)||(30736628-30736719)
chr6 (8-99)||(31013495-31013586)
chr6 (15-68)||(13210557-13210610)
chr6 (8-68)||(7271109-7271169)
chr6 (24-76)||(31833614-31833666)
chr6 (64-101)||(18991902-18991939)
chr6 (64-100)||(643657-643693)
chr6 (8-76)||(1870741-1870808)
chr6 (63-99)||(2913122-2913158)
[»] chr5 (13 HSPs)
chr5 (1-99)||(42897374-42897472)
chr5 (1-99)||(36982388-36982486)
chr5 (10-99)||(14044266-14044355)
chr5 (8-100)||(36767875-36767967)
chr5 (9-100)||(5712626-5712717)
chr5 (8-82)||(33404438-33404512)
chr5 (22-99)||(2970666-2970743)
chr5 (64-101)||(40512906-40512943)
chr5 (64-98)||(5364421-5364455)
chr5 (66-99)||(14044056-14044089)
chr5 (67-100)||(36768857-36768890)
chr5 (66-99)||(36982186-36982219)
chr5 (64-100)||(35448223-35448259)
[»] chr4 (30 HSPs)
chr4 (1-99)||(17493955-17494053)
chr4 (1-99)||(40071449-40071547)
chr4 (1-99)||(54438157-54438255)
chr4 (1-99)||(39788195-39788293)
chr4 (1-106)||(33800776-33800881)
chr4 (3-100)||(20789876-20789973)
chr4 (1-99)||(37064753-37064851)
chr4 (1-99)||(47199688-47199786)
chr4 (8-99)||(51744519-51744610)
chr4 (1-99)||(34408657-34408755)
chr4 (1-99)||(925136-925234)
chr4 (21-99)||(10441553-10441631)
chr4 (8-99)||(21240535-21240626)
chr4 (20-99)||(32217937-32218016)
chr4 (29-98)||(28689666-28689735)
chr4 (8-99)||(3172020-3172111)
chr4 (26-76)||(41555682-41555732)
chr4 (24-89)||(52101273-52101338)
chr4 (8-90)||(28910167-28910249)
chr4 (66-99)||(51744751-51744784)
chr4 (66-102)||(40071716-40071752)
chr4 (8-99)||(46870814-46870905)
chr4 (64-102)||(5744309-5744347)
chr4 (66-104)||(10441138-10441176)
chr4 (14-92)||(53509649-53509727)
chr4 (66-99)||(17493753-17493786)
chr4 (66-99)||(34408924-34408957)
chr4 (66-99)||(39787992-39788025)
chr4 (66-99)||(54438424-54438457)
chr4 (63-99)||(10385073-10385109)
[»] chr2 (23 HSPs)
chr2 (1-99)||(29194190-29194288)
chr2 (1-99)||(28585683-28585781)
chr2 (1-99)||(30422594-30422692)
chr2 (1-99)||(43370876-43370974)
chr2 (1-102)||(45080417-45080516)
chr2 (1-100)||(8381315-8381414)
chr2 (8-99)||(31921621-31921712)
chr2 (1-99)||(2110422-2110520)
chr2 (1-94)||(4828094-4828187)
chr2 (8-99)||(25898790-25898880)
chr2 (8-98)||(1779073-1779163)
chr2 (14-93)||(27922584-27922663)
chr2 (8-99)||(43377208-43377299)
chr2 (22-75)||(9370597-9370650)
chr2 (8-76)||(16970363-16970431)
chr2 (8-76)||(39646327-39646397)
chr2 (64-99)||(42038523-42038558)
chr2 (66-99)||(2110220-2110253)
chr2 (64-101)||(7443117-7443154)
chr2 (66-99)||(25898463-25898496)
chr2 (66-99)||(29193988-29194021)
chr2 (66-99)||(43370674-43370707)
chr2 (66-99)||(45080685-45080718)
[»] chr1 (17 HSPs)
chr1 (1-99)||(50777199-50777297)
chr1 (9-99)||(46862766-46862856)
chr1 (8-95)||(46371130-46371217)
chr1 (1-99)||(1929217-1929315)
chr1 (1-105)||(38321847-38321947)
chr1 (1-96)||(39150900-39150995)
chr1 (8-99)||(40562436-40562527)
chr1 (9-99)||(28036700-28036790)
chr1 (8-99)||(32046042-32046133)
chr1 (8-99)||(1207452-1207543)
chr1 (1-97)||(8229265-8229362)
chr1 (14-99)||(9129401-9129486)
chr1 (66-99)||(1929483-1929516)
chr1 (66-99)||(46370927-46370960)
chr1 (66-99)||(46862556-46862589)
chr1 (67-99)||(8229063-8229095)
chr1 (20-68)||(36326154-36326202)
[»] chr8 (17 HSPs)
chr8 (8-99)||(17493735-17493826)
chr8 (1-99)||(18575230-18575328)
chr8 (1-99)||(39907110-39907208)
chr8 (1-106)||(11254702-11254807)
chr8 (1-105)||(27820975-27821079)
chr8 (1-96)||(38069898-38069993)
chr8 (8-99)||(11147858-11147949)
chr8 (8-99)||(9753978-9754069)
chr8 (8-99)||(12738366-12738457)
chr8 (8-71)||(13243575-13243638)
chr8 (8-76)||(17335994-17336061)
chr8 (20-65)||(29638412-29638457)
chr8 (66-99)||(11254500-11254533)
chr8 (66-99)||(18575028-18575061)
chr8 (42-99)||(41371972-41372029)
chr8 (66-102)||(27820770-27820806)
chr8 (64-100)||(29708787-29708823)
[»] chr7 (22 HSPs)
chr7 (8-99)||(27596086-27596177)
chr7 (1-99)||(4041149-4041247)
chr7 (1-99)||(40232115-40232213)
chr7 (8-99)||(22338177-22338268)
chr7 (1-91)||(31689361-31689451)
chr7 (8-99)||(6392480-6392571)
chr7 (8-99)||(25943649-25943738)
chr7 (1-84)||(24300169-24300252)
chr7 (1-88)||(29737607-29737694)
chr7 (8-90)||(22619959-22620041)
chr7 (8-99)||(41427648-41427739)
chr7 (8-93)||(21442806-21442891)
chr7 (64-100)||(47713728-47713764)
chr7 (64-100)||(47713805-47713841)
chr7 (64-99)||(31466584-31466619)
chr7 (15-54)||(38276590-38276629)
chr7 (38-99)||(7380535-7380596)
chr7 (66-99)||(22337710-22337743)
chr7 (66-99)||(27596352-27596385)
chr7 (66-99)||(29737405-29737438)
chr7 (66-99)||(41427915-41427948)
chr7 (64-104)||(36819691-36819731)
[»] scaffold0519 (2 HSPs)
scaffold0519 (1-106)||(10586-10691)
scaffold0519 (66-99)||(10860-10893)
[»] scaffold0318 (2 HSPs)
scaffold0318 (17-96)||(16562-16641)
scaffold0318 (66-99)||(16357-16390)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-99)||(10017-10115)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-99)||(69955-70053)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-99)||(92169-92267)
[»] scaffold0532 (1 HSPs)
scaffold0532 (1-99)||(4016-4114)
[»] scaffold1194 (1 HSPs)
scaffold1194 (8-99)||(1177-1267)
[»] scaffold0459 (1 HSPs)
scaffold0459 (64-99)||(12752-12787)
[»] scaffold0366 (2 HSPs)
scaffold0366 (64-99)||(10393-10428)
scaffold0366 (64-99)||(14059-14094)
[»] scaffold0092 (1 HSPs)
scaffold0092 (64-101)||(44334-44371)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 29351857 - 29351760
Alignment:
Q  101 tagattagaataatagatgattctctcgtgggtgtgactgagaaattgaagttattattctatttattatagtagtaaatgtgatgtagtatcctatg 198  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29351857 tagattagaataataaatgattctctcgtgggtgtgactgagaaattgaagttattattctatttattatagtagtaaatgtgatgtagtatcctatg 29351760  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 40496975 - 40497074
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  40496975 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagggagtac 40497074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 50676675 - 50676776
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  50676675 aactcagtaaaaatatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagggagtac 50676774  T
Q  101 ta 102  Q
    ||    
T  50676775 ta 50676776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 51545864 - 51545962
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||    
T  51545864 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatgatcaaataggtcacttattcagggacggagagagta 51545962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 48169928 - 48170024
Alignment:
Q  3 ctcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  48169928 ctcagtaatagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagggagta 48170024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 54014439 - 54014537
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| |||||||||    
T  54014439 aactcagtaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggttacttattaagggacagagggagta 54014537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 41346249 - 41346350
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||||||||||||||    
T  41346249 aactcagtaaaagtatcacttactttctttcatctttacacttttcttaatctgtgtgaaatagtcaaatatgtcacttattcagggacggagggagtac 41346348  T
Q  101 ta 102  Q
    ||    
T  41346349 ta 41346350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 13542890 - 13542792
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||| ||||||    
T  13542890 aactcagtaaaagtatcaatctctttctttcatctttacacttttcttaatctatatgaaatggtcaaataggtcacttattcagggacggatggagta 13542792  T

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Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24709212 - 24709283
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaatag 72  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24709212 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatag 24709283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 30462877 - 30462967
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||| || |||||||| ||||||    
T  30462877 taaaaatatcactctatttctttcatctttatacttttcttaatctgtgtgaaatggtcaagtagatcactta-ttcgggacggatggagta 30462967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 48737735 - 48737824
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggag 97  Q
    ||||| ||||| | |||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||  |||| | ||||||||||||    
T  48737735 taaaaatatcattttctttctttcatctctacacttttcttaatctgtgtgaaattgtcaagtaggtcaagtattgaaggacggagggag 48737824  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 38492087 - 38492049
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtacta 102  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  38492087 gtcaactaggtcacttattcagggacggagggagtacta 38492049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 50676508 - 50676474
Alignment:
Q  66 caaataggtcacttatttagggacggagggagtac 100  Q
    ||||||||||||||||| |||||||||||||||||    
T  50676508 caaataggtcacttattcagggacggagggagtac 50676474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 30459839 - 30459806
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  30459839 caaataggtcacttattcagggacggagggagta 30459806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 41346080 - 41346047
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  41346080 caaataggtcacttattcagggacggagggagta 41346047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 54014270 - 54014237
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  54014270 caaataggtcacttattcagggacggagggagta 54014237  T

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Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 28541678 - 28541584
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtacta 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  28541678 taaaagtatcactctctttctttcatctttacacttttcttaatctgtgtaaaatggtcaaataggtcacttatttagggacggagggagtacta 28541584  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 12350474 - 12350573
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  12350474 aactcagtaaaagcatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttatttatggacggagggagtac 12350573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16435981 - 16436075
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| |||||||||||||    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  16435981 aactcagtaaaagtatcact----ttctttcatctttacacttttcttaatctgtgtgaaatgctcaaataggtcacttattcagggacggagggagta 16436075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29182793 - 29182874
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatt 82  Q
    |||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||    
T  29182793 aactcagtaaaaatatcactctctttctttcatctttacatttttcttaatctgtgtgaaatggtcaaatatgtcacttatt 29182874  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13042173 - 13042278
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||  |||||||| ||||||||| | |||||||||||| ||    
T  13042173 aactcagtaaaaatatcactctctttctttcatctttacactttt-ttaatctgtgtgaaataatcaaatagatcacttattcaaggacggagggaggac 13042271  T
Q  101 tagatta 107  Q
    || ||||    
T  13042272 tatatta 13042278  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 1241310 - 1241411
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| ||||||||||||| |||||||||||| |||||| |||||||||| || |||||||| | |||||| | ||||||| |||||||||||||||||    
T  1241310 aactcagtaaaagtatcactttctttctttcatttttacatttttcttaatttgtgtgaaatgatgaaatagattacttattcagggacggagggagtac 1241409  T
Q  101 ta 102  Q
    ||    
T  1241410 ta 1241411  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 30736628 - 30736719
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||  |||| || |||||||||||||    
T  30736628 taaaaatatcattctctttctttcatctttacacttttcttaatctgtgtgaaatagttaaataggtcaagtattgagagacggagggagta 30736719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 31013586 - 31013495
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| | |||||||||| | ||||||||||||||||||||  ||||||||||||||||||||  |||| ||||||||| ||||||    
T  31013586 taaaaatatcattatctttctttcgtttttacacttttcttaatctgtatgaaatggtcaaataggtcaagtattgagggacggaaggagta 31013495  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 13210557 - 13210610
Alignment:
Q  15 atcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaa 68  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13210557 atcattctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaa 13210610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 7271169 - 7271109
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaa 68  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||    
T  7271169 taaaaatatcattctatttctttcatctttacacttttcttaatctgtgtgaaattgtcaa 7271109  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 31833666 - 31833614
Alignment:
Q  24 tttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtca 76  Q
    |||||||||||||||||||||||||||| || || |||||||||| |||||||    
T  31833666 tttctttcatctttacacttttcttaatttgtgtaaaatggtcaagtaggtca 31833614  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 18991939 - 18991902
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtact 101  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  18991939 gtcaactaggtcacttattcagggacggagggagtact 18991902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 643657 - 643693
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtac 100  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  643657 gtcaactaggtcatttatttagggacggagggagtac 643693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 1870741 - 1870808
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtca 76  Q
    ||||| ||||| || |||||||||||||||| ||||||| ||||||| || |||| ||||| |||||||    
T  1870741 taaaaatatcattccctttctttcatctttatacttttc-taatctgtgtaaaattgtcaagtaggtca 1870808  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 2913122 - 2913158
Alignment:
Q  63 ggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  2913122 ggtcaactaggtcacttattaagggacggagggagta 2913158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 42897472 - 42897374
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  42897472 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagggacggagggagta 42897374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 36982388 - 36982486
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  36982388 aactcagtaaaagtatcactctttttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagggacggagggagta 36982486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 14044266 - 14044355
Alignment:
Q  10 aaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||| ||||||||||||||||    
T  14044266 aaagtatcactctctttctttcatctttacacttttcttaatacgtgtgaaatgatcaaataggtcacttattcagggacggagggagta 14044355  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 36767967 - 36767875
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    ||||| ||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||| ||||| ||| |||||||    
T  36767967 taaaaatatcactctctttctttcatctttacactctttttaatctgtgtgaagtggtcaaataggtcacttattcagggagggacggagtac 36767875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 5712626 - 5712717
Alignment:
Q  9 aaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||| ||||| |||||||||||||||||    
T  5712626 aaaaatatcactttctttctttcatctttacatttttcttaatctgtgtggaatggtcaagtaggtcatttattcagggacggagggagtac 5712717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 33404438 - 33404512
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatt 82  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||| |||| |||||||||||||    
T  33404438 taaaaatatcactctctttctttcatctttacatttttcttaatctgtgtaaaatgatcaagtaggtcacttatt 33404512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 2970743 - 2970666
Alignment:
Q  22 tctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||  |||| |||||| |||||||||    
T  2970743 tctttctttcatctttacatttttcttaatctgtgtgaaatggtcaagtaggtcaaatattgagggacagagggagta 2970666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 40512906 - 40512943
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtact 101  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  40512906 gtcaactaggtcacttatttagggacggagggagtact 40512943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 5364455 - 5364421
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagt 98  Q
    ||||| |||||||||||||||||||||||||||||    
T  5364455 gtcaactaggtcacttatttagggacggagggagt 5364421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 14044089 - 14044056
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  14044089 caaataggtcacttattcagggacggagggagta 14044056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 36768857 - 36768890
Alignment:
Q  67 aaataggtcacttatttagggacggagggagtac 100  Q
    |||||||||||||||| |||||||||||||||||    
T  36768857 aaataggtcacttattcagggacggagggagtac 36768890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 36982219 - 36982186
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  36982219 caaataggtcacttattcagggacggagggagta 36982186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 35448223 - 35448259
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtac 100  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  35448223 gtcaactaggtcatttatttagggacggagggagtac 35448259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 17493955 - 17494053
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  17493955 aactcaataaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagggagta 17494053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 40071547 - 40071449
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  40071547 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagggagta 40071449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 54438255 - 54438157
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  54438255 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatcggtgtgaaatggtcaaataggtcacttatttagggacggagggagta 54438157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39788195 - 39788293
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  39788195 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagggacgaagggagta 39788293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 33800881 - 33800776
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||    
T  33800881 aactcagtaaaagtatcactctctttcttccatctttacacttttctgaatctgtgtgaaatggtcaaataggtcacttattcagggacggagggactac 33800782  T
Q  101 tagatt 106  Q
    ||||||    
T  33800781 tagatt 33800776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 20789876 - 20789973
Alignment:
Q  3 ctcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||    
T  20789876 ctcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatagatcacttattcaggaacggagggagtac 20789973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 37064851 - 37064753
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| ||||||||| ||||||    
T  37064851 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctatgtgaaatgatcaaataggtcacttattcagggacggatggagta 37064753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 47199688 - 47199786
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||    
T  47199688 aactcaataaaaatatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatagatcacttattcaggtacggagggagta 47199786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 51744610 - 51744519
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  51744610 taaaagtatcactctctttctcacatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagggacggagagagta 51744519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34408755 - 34408657
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||| ||||||||||||||||| ||||||||||||||||    
T  34408755 aactcaataaaagtatcattctctttctttcatctttacacttttcctaatatgtgtgaaatggccaaataggtcacttattcagggacggagggagta 34408657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 925234 - 925136
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||    
T  925234 aactcagtaaaagtatcactttatttcttttatctttacacttttcttaatctgtgtgaaatgatcaaataagtcacttattaagggacggagggagta 925136  T

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Target: chr4; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 10441553 - 10441631
Alignment:
Q  21 ctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||    
T  10441553 ctctttcttttatctttacacttatcttaatctgtgtgaaatggtcaagtaggtcacttattcagggacggagggagta 10441631  T

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Target: chr4; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 21240535 - 21240626
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||  |||  ||||||||||||||||    
T  21240535 taaaaatatcattctctttctttcatctctacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtatcgagggacggagggagta 21240626  T

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Target: chr4; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 32218016 - 32217937
Alignment:
Q  20 tctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |  |||| |||||||| |||||||    
T  32218016 tctctttctttcatctttacactcttcttaatctgtgtgaaatggtcaagtaggtaaagtattgagggacggtgggagta 32217937  T

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Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 28689735 - 28689666
Alignment:
Q  29 ttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagt 98  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||| |||||| ||||||||    
T  28689735 ttcatctttacatttttcttaatctgtgtgaaatagtcaaatagatcacttattcagggacagagggagt 28689666  T

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Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 3172111 - 3172020
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| | ||||| ||||||||||||| ||||||||||||| ||||||||||||| ||| |||  |||| ||||||| ||||||||    
T  3172111 taaaaatatcattatctttttttcatctttacatttttcttaatctgtgtgaaatggtcaagtagatcaagtattgagggacgaagggagta 3172020  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 41555682 - 41555732
Alignment:
Q  26 tctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtca 76  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  41555682 tctttcatctttacacttttcttaatctgtgtgaaatggccaagtaggtca 41555732  T

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Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 52101273 - 52101338
Alignment:
Q  24 tttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggac 89  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| | |||||  |||| ||||||    
T  52101273 tttctttcatctttacacttttcttaatctgtgtgaaatagtcaagttggtcaagtattgagggac 52101338  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 28910249 - 28910167
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacg 90  Q
    ||||| ||||| |||||||||||||||||| || ||||||||||||  |||||||  |||| |||||||  |||| |||||||    
T  28910249 taaaaatatcattctctttctttcatctttgcatttttcttaatctatgtgaaataatcaagtaggtcaagtattgagggacg 28910167  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 51744751 - 51744784
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||||||||||||||||||||    
T  51744751 caaataggtcacttatttagggacggagggagta 51744784  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 40071716 - 40071752
Alignment:
Q  66 caaataggtcacttatttagggacggagggagtacta 102  Q
    ||||||||||||||||| |||||||||||||||||||    
T  40071716 caaataggtcacttattcagggacggagggagtacta 40071752  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 46870814 - 46870905
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| ||||||||||||||| || ||||||| ||| | || ||||||| ||||| |||||||  |||| | ||||||||| ||||    
T  46870814 taaaaatatcattctctttctttcatccttgcactttttttactatgtgtgaaattgtcaagtaggtcaagtattgacggacggaggaagta 46870905  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 5744309 - 5744347
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtacta 102  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  5744309 gtcaactaggtcatttatttagggacggagggagtacta 5744347  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 10441176 - 10441138
Alignment:
Q  66 caaataggtcacttatttagggacggagggagtactaga 104  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  10441176 caaataggtcacttattcagggacggagggagtattaga 10441138  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 53509727 - 53509649
Alignment:
Q  14 tatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacgga 92  Q
    ||||| ||| ||||||||||||||||||||||| ||||  | || |||| ||||||||| |||  |||| |||||||||    
T  53509727 tatcattctttttctttcatctttacacttttcataataagtgtaaaattgtcaaatagatcaaatattgagggacgga 53509649  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 17493786 - 17493753
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  17493786 caaataggtcacttattcagggacggagggagta 17493753  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 34408924 - 34408957
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  34408924 caaataggtcacttattcagggacggagggagta 34408957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 39788025 - 39787992
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    |||||||||||||||||||| |||||||||||||    
T  39788025 caaataggtcacttatttagagacggagggagta 39787992  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 54438424 - 54438457
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  54438424 caaataggtcacttattcagggacggagggagta 54438457  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 10385073 - 10385109
Alignment:
Q  63 ggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  10385073 ggtcaactaggtcacttattaagggacggagggagta 10385109  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29194190 - 29194288
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||    
T  29194190 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatttgtgtgaaatggtcaaataggtcacttattcagggacggagggagta 29194288  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 28585781 - 28585683
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||    
T  28585781 aactcagtaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggatggagta 28585683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 30422594 - 30422692
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||    
T  30422594 aactcagtaaaagtatcactctctttctttcatcgttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagcgacggagggagta 30422692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 43370876 - 43370974
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  43370876 aactcagtaaaagtatcactctctttcttttatttttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagggagta 43370974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 45080516 - 45080417
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  45080516 aactcagtaaaagtatcactct--ttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattcagggacggagggagtac 45080419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8381414 - 8381315
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||    
T  8381414 aactcagtaaaagtatcactctatttctttcatctttacatttttcttaatctgtgtgaaatggtcaaatagatcacttattcagggacggagggagtac 8381315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 31921712 - 31921621
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  31921712 taaaaatatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatagatcacttattcagggacggagggagta 31921621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2110422 - 2110520
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||| ||||||    
T  2110422 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatgatcaaatatgtcacttattcagggacggaaggagta 2110520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 4828187 - 4828094
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagg 94  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||    
T  4828187 aactcagtaaaagtatcactctttttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaaggaacggagg 4828094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 25898790 - 25898880
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||| || |||||||||| ||| ||||||||||||    
T  25898790 taaaaatatcactttttttctttcatctttacactcttcttaatctgtgtgaaatggtcaagta-gtcacttattcaggaacggagggagta 25898880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 1779163 - 1779073
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagt 98  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||  ||||||||||||| || ||||  |||| ||||||||| |||||    
T  1779163 taaaaatatcattatctttctttcatctttacacttttcttaatctatgtgaaatggtcaagtaagtcaagtattgagggacggaaggagt 1779073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 27922663 - 27922584
Alignment:
Q  14 tatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggag 93  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||| | |  |||| ||||||||||    
T  27922663 tatcattctctttctttcatctttacacttttcttaatatgtgtgaaatgatcaaatagattaaatattgagggacggag 27922584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 43377299 - 43377208
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||| | |||||||||||||||||||||||||||||| ||  ||||||||| |  |||||||  |||| | ||||||||||||||    
T  43377299 taaaagtatcattttctttctttcatctttacacttttcttaatttgtttgaaatggttatgtaggtcaagtattgaaggacggagggagta 43377208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 9370597 - 9370650
Alignment:
Q  22 tctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtc 75  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  9370597 tctttttttcatctttacacttttcttaatctgtgtgaaatggtcaagtaggtc 9370650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 16970363 - 16970431
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtca 76  Q
    ||||| ||||| | ||||||||| |||||||||||||||||||| || ||||||||| ||| |||||||    
T  16970363 taaaaatatcattatctttcttttatctttacacttttcttaatatgtgtgaaatggccaagtaggtca 16970431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 39646397 - 39646327
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacactttt--cttaatctgcgtgaaatggtcaaataggtca 76  Q
    ||||| ||||| |||||||||||||| |||||| ||||  |||||||||  ||||||||||||||| ||||    
T  39646397 taaaaatatcattctctttctttcatttttacatttttttcttaatctgtatgaaatggtcaaatatgtca 39646327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 42038558 - 42038523
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||||||||||||||||||||||||||||    
T  42038558 gtcaactaggtcacttatttagggacggagggagta 42038523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 2110253 - 2110220
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  2110253 caaataggtcacttattcagggacggagggagta 2110220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 7443117 - 7443154
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtact 101  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  7443117 gtcaactaggtcacttattcagggacggagggagtact 7443154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 25898496 - 25898463
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  25898496 caaataggtcacttattcagggacggagggagta 25898463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 29194021 - 29193988
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  29194021 caaataggtcacttattcagggacggagggagta 29193988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 43370707 - 43370674
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  43370707 caaataggtcacttattcagggacggagggagta 43370674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 45080685 - 45080718
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  45080685 caaataggtcacttattcagggacggagggagta 45080718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 50777199 - 50777297
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  50777199 aactcagtaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagggagta 50777297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 46862766 - 46862856
Alignment:
Q  9 aaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  46862766 aaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggacggagggagta 46862856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 46371130 - 46371217
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggaggg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  46371130 taaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatagatcacttattaagggacggaggg 46371217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1929315 - 1929217
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||    
T  1929315 aactcagtaaaagtatcactctttttctttcatctttacacttttcttaatctgtgtgaaatgatcaaatatgtcacttattcagggacggagggagta 1929217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 38321847 - 38321947
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    |||||||||||||| ||||| | |||||||||    
T  38321847 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatgg----ataggtcacttattaagggatgaagggagtac 38321942  T
Q  101 tagat 105  Q
    |||||    
T  38321943 tagat 38321947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39150995 - 39150900
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggaggga 96  Q
    |||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||    
T  39150995 aactcagtaaaagtatcattctctttcttttatctttacatttttcttaatctgtgtgaaatggtcaaatagatcacttattaagggacggaggga 39150900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 40562527 - 40562436
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||  |||| ||||||||||||||||    
T  40562527 taaaaatatcattctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtattgagggacggagggagta 40562436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 28036790 - 28036700
Alignment:
Q  9 aaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| |||||||||| ||||||| ||||||||    
T  28036790 aaaaatatcactctctttcttttatctttacacttttcttaatttgtgtgaaatggtcaaataagtcacttattaagggacgaagggagta 28036700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 32046042 - 32046133
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||||| || || ||||||||||    
T  32046042 taaaagtatcactttctttctttcatttttacacttttcttaatctgtgtgaaatggtcaaataaatcacttattcagtgatggagggagta 32046133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 1207543 - 1207452
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| | |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||  |||| ||||||||||||||||    
T  1207543 taaaaatatcattatctttctttcatctctacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtattaagggacggagggagta 1207452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 8229265 - 8229362
Alignment:
Q  1 aactcactaaaagtatcactctctttcttt-catctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggag 97  Q
    |||||| ||||| ||||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||||  ||||||||| || ||| |||||||    
T  8229265 aactcagtaaaaatatcactcttttttttttcatctttacacttttcttaatctgtgtgaaatggtcaaataaatcacttattcagagaccgagggag 8229362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 9129486 - 9129401
Alignment:
Q  14 tatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||||||||| |||||||||||||| |||||||  ||||||| ||||| ||  |||| |||| |||||| |||||||||    
T  9129486 tatcattctctttcttttatctttacacttttgttaatctttgtgaaatagtcaagtatatcacgtattgagggaccgagggagta 9129401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 1929483 - 1929516
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||||||||||||||||||||    
T  1929483 caaataggtcacttatttagggacggagggagta 1929516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 46370960 - 46370927
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  46370960 caaataggtcacttattcagggacggagggagta 46370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 46862589 - 46862556
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  46862589 caaataggtcacttattcagggacggagggagta 46862556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 8229095 - 8229063
Alignment:
Q  67 aaataggtcacttatttagggacggagggagta 99  Q
    |||||||||||||||| ||||||||||||||||    
T  8229095 aaataggtcacttattcagggacggagggagta 8229063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 36326202 - 36326154
Alignment:
Q  20 tctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaa 68  Q
    ||||| |||||||| | |||||||||||||||||| |||||||| ||||    
T  36326202 tctctctctttcatttatacacttttcttaatctgtgtgaaatgttcaa 36326154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 17493735 - 17493826
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  17493735 taaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatgatcaaataggtcacttattcagggacggagggagta 17493826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 18575230 - 18575328
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||||||||||    
T  18575230 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatttgtgtgaaatgatcaaataggtcacttattcagggacggagggagta 18575328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39907110 - 39907208
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||| ||||||||||||||||    
T  39907110 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtaaaatggtcaaataagtcacttattaagggacggagggagta 39907208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 11254702 - 11254807
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||||||||| ||||||||||||||||     
T  11254702 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatttatgtggaatggtcaaataggtcacttattcagggacggagggagtaa 11254801  T
Q  101 tagatt 106  Q
    ||||||    
T  11254802 tagatt 11254807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 27820975 - 27821079
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||||     
T  27820975 aactcagtaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaaaggacgaagggagtat 27821074  T
Q  101 tagat 105  Q
    |||||    
T  27821075 tagat 27821079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 38069993 - 38069898
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggaggga 96  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | |||||||||||    
T  38069993 aactcagtaaaagtatcactatctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttgttcaaggacggaggga 38069898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 11147858 - 11147949
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||    
T  11147858 taaaaatatcattctcttcctttcatctttacacttttcttaatctgtgtgaaatgatcaagtaggtcacttattcagggacggagggagta 11147949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 9753978 - 9754069
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||  |||| ||||||||||||||||    
T  9753978 taaaaatatcattatctttctttcatctttacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtattgagggacggagggagta 9754069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 12738457 - 12738366
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  |||| |||||||||| |||||    
T  12738457 taaaaatatcattatctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcaagtattgagggacggagagagta 12738366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 13243638 - 13243575
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaata 71  Q
    ||||| ||||| | ||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  13243638 taaaaatatcattatctttcttttatctttacacttttcttaatcggtgtgaaatggtcaaata 13243575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 17336061 - 17335994
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtca 76  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||| |  ||||||| |||||||||||||    
T  17336061 taaaaatatcattctctttctttcatctttaca-ttttcttaatttatgtgaaattgtcaaataggtca 17335994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 29638412 - 29638457
Alignment:
Q  20 tctctttctttcatctttacacttttcttaatctgcgtgaaatggt 65  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||    
T  29638412 tctctttctttcatttatacacttttcttaatctgtgtgaaatggt 29638457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 11254533 - 11254500
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  11254533 caaataggtcacttattcagggacggagggagta 11254500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 18575061 - 18575028
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  18575061 caaataggtcacttattcagggacggagggagta 18575028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 41372029 - 41371972
Alignment:
Q  42 ttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||||||||| | |||||||||||| |||||||  |||| ||||| ||||||||||    
T  41372029 ttttcttaatctacttgaaatggtcaagtaggtcaagtattgagggagggagggagta 41371972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 27820806 - 27820770
Alignment:
Q  66 caaataggtcacttatttagggacggagggagtacta 102  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  27820806 caaataggtcacttattcagggacagagggagtacta 27820770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 29708787 - 29708823
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtac 100  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  29708787 gtcaactaggtcacttattaagggacggagggagtac 29708823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 27596177 - 27596086
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||    
T  27596177 taaaagtatcactctctttctttcatctttacacttttcttaatctgtgtaaaatggtcaaataagtcacttatttagggacggagggagta 27596086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4041149 - 4041247
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  4041149 aactcagtaaaagtatcactccctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattaagggacggagggagta 4041247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 40232213 - 40232115
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  40232213 aactcagtaaaagtatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaatagatcacttattaagggacggagggagta 40232115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 22338177 - 22338268
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||    
T  22338177 taaaaatatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggttaagtaggtcacttatttagggacggagggagta 22338268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 31689451 - 31689361
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacgg 91  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||    
T  31689451 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtgaaatatgtcacttatttagggacgg 31689361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 6392480 - 6392571
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| | ||||||||||||||    
T  6392480 taaaagtatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggtaaaatatgtcacttattcaaggacggagggagta 6392571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 25943738 - 25943649
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  |||||||| |||||||||||||||||| ||||||||||||||||    
T  25943738 taaaagtatcactctctttctttcatctttacaattttcttaatct--gtgaaatgatcaaataggtcacttattcagggacggagggagta 25943649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 24300252 - 24300169
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttattta 84  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  24300252 aactcagtaaaagtatcactctctttctttcatcttcacacttttcttaatctgtgtgaaatggtcaaatatgtcacttattta 24300169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 29737607 - 29737694
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttaggga 88  Q
    |||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  29737607 aactcagtaaaagtatcactctctttcttttatttttacacttttcttaatctgtgtgaaatggtcaaataagtcacttattaaggga 29737694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 22619959 - 22620041
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacg 90  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||    
T  22619959 taaaaatatcactctctttctttcatctttacacttttcttaatctgtgtgaaatgatcaagtaggtcacttattcagggacg 22620041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 41427739 - 41427648
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| ||||||||  || |||||||| |||||||||||||    
T  41427739 taaaagtattactctctttctttcatctttacactttttttaatctgtgtgaaatgatcaaatagaccatttatttagagacggagggagta 41427648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 21442891 - 21442806
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggag 93  Q
    ||||| ||||| ||| ||| |||||||||||||||||||||||||||  ||||||||| || |||||||  |||| ||||||||||    
T  21442891 taaaaatatcattctatttttttcatctttacacttttcttaatctgtatgaaatggtgaagtaggtcaaatattgagggacggag 21442806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 47713728 - 47713764
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtac 100  Q
    ||||| |||||||||||||||||||||||||||||||    
T  47713728 gtcaactaggtcacttatttagggacggagggagtac 47713764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 47713805 - 47713841
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtac 100  Q
    ||||| |||||||||||||||||||||||||||||||    
T  47713805 gtcaactaggtcacttatttagggacggagggagtac 47713841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 31466584 - 31466619
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31466584 gtcaactaggtcacttatttagggacggagggagta 31466619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 38276629 - 38276590
Alignment:
Q  15 atcactctctttctttcatctttacacttttcttaatctg 54  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  38276629 atcattctctttctttcatctttactcttttcttaatctg 38276590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 7380596 - 7380535
Alignment:
Q  38 acacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||||| |||||||| ||||||||||||| ||| ||||||||| |  |||||||| ||||    
T  7380596 acactttttttaatctgtgtgaaatggtcaagtagatcacttattcaaagacggaggaagta 7380535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 22337743 - 22337710
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  22337743 caaataggtcacttattcagggacggagggagta 22337710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 27596352 - 27596385
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  27596352 caaataggtcacttattcagggacggagggagta 27596385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 29737438 - 29737405
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  29737438 caaataggtcacttattcagggacggagggagta 29737405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 41427915 - 41427948
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||||| ||||||||||||||    
T  41427915 caaataggtcacttatttaaggacggagggagta 41427948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 36819731 - 36819691
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtactaga 104  Q
    ||||| ||||||| |||||||||||||||||||||| ||||    
T  36819731 gtcaactaggtcatttatttagggacggagggagtagtaga 36819691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10691 - 10586
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagtac 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||||||||| ||||||||||||||||     
T  10691 aactcagtaaaagtatcactctctttctttcatctttacacttttcttaatttatgtggaatggtcaaataggtcacttattcagggacggagggagtaa 10592  T
Q  101 tagatt 106  Q
    ||||||    
T  10591 tagatt 10586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 10860 - 10893
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  10860 caaataggtcacttattcagggacggagggagta 10893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 16562 - 16641
Alignment:
Q  17 cactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggaggga 96  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16562 cactctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttatttagggacggaggga 16641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 16390 - 16357
Alignment:
Q  66 caaataggtcacttatttagggacggagggagta 99  Q
    ||||||||||||||||| ||||||||||||||||    
T  16390 caaataggtcacttattcagggacggagggagta 16357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 10115 - 10017
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||    
T  10115 aactcagtaaaaatatcactctctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcacttattaagggatggagggagta 10017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 69955 - 70053
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||||||||||||    
T  69955 aactcagtaaaattatcactctctttctttcatctttacacttttcttaatctgtatcaaatggtcaaataagtcacttatttagggacggagggagta 70053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 92267 - 92169
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||| ||||||||||||    
T  92267 aactcagtaaaagtgtcactctctttctttcatctttacacttttcttaatctatgtgaaatggtcacataggtcacttattcaggaacggagggagta 92169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4016 - 4114
Alignment:
Q  1 aactcactaaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    |||||| |||||||| | |||| ||| |||||||||||| |||||||||||||| ||||||||||||||||| | | ||||| ||||||||||||||||    
T  4016 aactcagtaaaagtagcgctctttttttttcatctttacccttttcttaatctgtgtgaaatggtcaaatagattatttattcagggacggagggagta 4114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 1177 - 1267
Alignment:
Q  8 taaaagtatcactctctttctttcatctttacacttttcttaatctgcgtgaaatggtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||| |||||||||||||||||||||||| | ||||| || ||||||||||||| ||||| |  |||| ||||||||||||||||    
T  1177 taaaaatatcattctctttctttcatctttacacttgt-ttaatttgtgtgaaatggtcaagtaggtgaagtattgagggacggagggagta 1267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 12787 - 12752
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12787 gtcaactaggtcacttatttagggacggagggagta 12752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 10428 - 10393
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10428 gtcaactaggtcacttatttagggacggagggagta 10393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 14094 - 14059
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagta 99  Q
    ||||| ||||||||||||||||||||||||||||||    
T  14094 gtcaactaggtcacttatttagggacggagggagta 14059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 44334 - 44371
Alignment:
Q  64 gtcaaataggtcacttatttagggacggagggagtact 101  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  44334 gtcaactaggtcatttatttagggacggagggagtact 44371  T

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