View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_6 (Length: 491)
Name: NF5584_low_6
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 172 - 473
Target Start/End: Complemental strand, 51195199 - 51194898
Alignment:
| Q |
172 |
gatgttcagatacattaaatatttcatacttcattcattttttattcttaaccataggcttattcgtatcttgtgtttgtgagtctgaatcaaagtcctg |
271 |
Q |
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| T |
51195199 |
gatgttcagatacattaaatatttcatacttcattcattttttattcttaaccacaggcttattagtatcttgtgtttgtgagtctgaatcaaagtcctg |
51195100 |
T |
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| Q |
272 |
nnnnnnnttattttcttgtatcagcctgttaatgacatgtggattgattcgcctgtgtttgtcaaaagccaagtcaaaatttggttctttcaattgcaat |
371 |
Q |
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| T |
51195099 |
aaaaaaattattttcttgtattagcctgttaatgacatgtggattgattcgcctgtgtttgtcaaaagccaagtcaaaatttggttctttcaattgcaat |
51195000 |
T |
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| Q |
372 |
tacaatatctatcaaatggctaaatattctaagctgccactggacttacacctttatttaagagtctcaaggattattaccagaattgaaggtaagtgtt |
471 |
Q |
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| T |
51194999 |
tacaatatctatcaaatggctaaatattctaagctgccactggacttacacctttatttaagagtctcaaggattattaccagaattgagggtaagtgtt |
51194900 |
T |
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| Q |
472 |
aa |
473 |
Q |
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|| |
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| T |
51194899 |
aa |
51194898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 51195358 - 51195305
Alignment:
| Q |
13 |
aaaatattccgagtgattaaaataaatggagttatatagtatatatttggagtg |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51195358 |
aaaatattccgagtgattaaaataaatggagttatatagtatatatttggagtg |
51195305 |
T |
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