View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_7 (Length: 457)
Name: NF5584_low_7
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_7 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 50390508 - 50390052
Alignment:
| Q |
1 |
cactggtgaagggtcaaccaaagcaagctttttactctgccaaatcttgttctcttcaataaaaacaacagcaagtgggagaaaaagcaagaaaatcacc |
100 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390508 |
cactggtgaaggatcaaccaaagcaagttttttactctgccaaatcttgttctcttcaataaaaacaacagcaagtgggagaaaaagcaagaaaatcacc |
50390409 |
T |
|
| Q |
101 |
acagcagcacttaaaccgaacccaccctgtgtgaaactactactcttctctataataattataaccaacaagaaaccagcaagagcaagtgagatgtaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390408 |
acagcagcacttaaaccgaacccaccctgtgtgaaactactactcttctctataataattataaccaacaagaaaccagcaagagcaagtgagatgtaca |
50390309 |
T |
|
| Q |
201 |
agaaattataaaaaaccttaagctcattgacttgtcgaacaggttttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390308 |
agaaattataaaaaaccttaagctcattgacttgtcgaacaggttttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacc |
50390209 |
T |
|
| Q |
301 |
tataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattccc |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390208 |
tataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattccc |
50390109 |
T |
|
| Q |
401 |
aaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtg |
457 |
Q |
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| T |
50390108 |
aaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtg |
50390052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 50393782 - 50393330
Alignment:
| Q |
1 |
cactggtgaagggtcaaccaaagcaagctttttactctgccaaatcttgttctcttcaataaaaacaacagcaagtgggagaaaaagcaagaaaatcacc |
100 |
Q |
| |
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|||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| || |
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| T |
50393782 |
cactggtgaaggatctaccaaagcatgttttttactctgccaaatcttgttctcttcaatgaaaacaacaacaagtggaagaaaaagcaagaaaacaacg |
50393683 |
T |
|
| Q |
101 |
acagcagcacttaaaccgaacccaccctgtgtgaaactactactcttctctataataattataaccaacaagaaaccagcaagagcaagtgagatgtaca |
200 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||||| |||||| || ||||| |||||||||||||| |||||||| ||||||| | |||| |
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| T |
50393682 |
acagcagcacttaaaccaaactcaccctgtgtgaaactactcttcttctggattataatcataaccaacaagaatccagcaaggccaagtgaaacataca |
50393583 |
T |
|
| Q |
201 |
agaaattataaaaaaccttaagctcattgacttgtcgaacaggttttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacc |
300 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||| || |||||||| |||||||||||||| |
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| T |
50393582 |
agaaattataaaaaaccttaagctcattaacttgtcgaacaggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacc |
50393483 |
T |
|
| Q |
301 |
tataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattccc |
400 |
Q |
| |
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||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||| || |||||||||||||||| ||| ||||| ||||||||| |
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| T |
50393482 |
tataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagaccaacataacctttaagaattccc |
50393383 |
T |
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| Q |
401 |
aaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaacc |
453 |
Q |
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||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
50393382 |
aaaaccgctccgcgagattcagggaaattcttaacacaagtcacaagtgaacc |
50393330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 50385363 - 50384911
Alignment:
| Q |
1 |
cactggtgaagggtcaaccaaagcaagctttttactctgccaaatcttgttctcttcaataaaaacaacagcaagtgggagaaaaagcaagaaaatcacc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| || |
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| T |
50385363 |
cactggtgaaggatcaaccaaagcaagttttttactctgccaaatcttgttctcttcaatgaaaacaacggcaagtggtagaaaaagcaagaaaataacg |
50385264 |
T |
|
| Q |
101 |
acagcagcacttaaaccgaacccaccctgtgtgaaactactactcttctctataataattataaccaacaagaaaccagcaagagcaagtgagatgtaca |
200 |
Q |
| |
|
||||||||||||||||| || ||| ||||| |||||| |||||| || || || |||||||||||||| ||||||||| |||||||||| |||| |
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| T |
50385263 |
acagcagcacttaaaccatactcactctgtgaaaaactaaccttcttctgaattatgatcataaccaacaagaatccagcaagaccaagtgagatataca |
50385164 |
T |
|
| Q |
201 |
agaaattataaaaaaccttaagctcattgacttgtcgaacaggttttatataccgaatggttctaagaaaagcgaatgaaatagcggcaggaagccaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||| || |||||||| |||||||||||||| |
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| T |
50385163 |
agaaattataaaaaaccttaagctcattaacttgtcgaacaggtttcatatatcgaatggttcgaagaaaagcaaacgaaatagcagcaggaagccaacc |
50385064 |
T |
|
| Q |
301 |
tataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattccc |
400 |
Q |
| |
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|||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||| ||||| ||||||||| |
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| T |
50385063 |
aataaacaaaatcaaagcctttgtgtcatcataataaatagcagagtaaagctgtgtgatgattgcaccactgagaccaacatagcctttaagaattccc |
50384964 |
T |
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| Q |
401 |
aaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaacc |
453 |
Q |
| |
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||||| || ||||||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
50384963 |
aaaaccgcgccgcgagattcagggaaattcttaacacaagtcacaagtgaacc |
50384911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 290 - 453
Target Start/End: Complemental strand, 50407106 - 50406943
Alignment:
| Q |
290 |
ggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatcctt |
389 |
Q |
| |
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||||||||| | ||||||||||||||||| |||| ||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
50407106 |
ggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataacctt |
50407007 |
T |
|
| Q |
390 |
ttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaacc |
453 |
Q |
| |
|
||| ||| ||||| ||| | || |||| |||||||||||||||||||||||||||||||||||| |
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| T |
50407006 |
ttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaacc |
50406943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 24223995 - 24223903
Alignment:
| Q |
307 |
caaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatccttttagaattcc |
399 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||||||| |
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| T |
24223995 |
caaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgatgattgcaccactaagaccaacataacatttaagaattcc |
24223903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 34297282 - 34297244
Alignment:
| Q |
6 |
gtgaagggtcaaccaaagcaagctttttactctgccaaa |
44 |
Q |
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|||||||||||||||||| ||| |||||||||||||||| |
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| T |
34297282 |
gtgaagggtcaaccaaagtaagttttttactctgccaaa |
34297244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 12006743 - 12006667
Alignment:
| Q |
38 |
tgccaaatcttgttctcttcaataaaaacaacagcaagtgggaga---aaaagcaagaaaatcaccacagcagcact |
111 |
Q |
| |
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||||||||| ||||||||||||||||| ||| ||||||||| ||| || ||| ||||||| |||||| ||||||| |
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| T |
12006743 |
tgccaaatcctgttctcttcaataaaatcaatagcaagtggaagaaggaagagctagaaaataaccacaacagcact |
12006667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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