View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_8 (Length: 451)
Name: NF5584_low_8
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 150 - 435
Target Start/End: Complemental strand, 24866580 - 24866297
Alignment:
| Q |
150 |
aatagtgatggttgccttgcagcaaagccacacactgtccttctatttctctctatatcagtcccatcatacccctcattcaaatgaccaaattcctttt |
249 |
Q |
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| T |
24866580 |
aatagtgaaggttgccttgcagcaaagccacacactgtccttctatttccctctatataactcccatcaaacccctcattcaaatgaccaaattcctttt |
24866481 |
T |
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| Q |
250 |
ctccactaccccaaaaagtgagaaaggaaggaggaaacaactttcattttcccnnnnnnnnnnnnnccccttaattttcttctccatattaataatggca |
349 |
Q |
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| T |
24866480 |
ctccactaccccaaaaagtgagaaaggaaggaggaaacaactttcattttcccaaaaaaaaaaaaa--ccttaattttcttctccatattaataatggca |
24866383 |
T |
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| Q |
350 |
gcttcagttgataaccgtcaattccgtaacctaaacggcgtcgttcacactttcaatccaagcaacaatttcatccacgacctgaa |
435 |
Q |
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| T |
24866382 |
gcttcagttgataaccgtcaattccgtaacctaaacggcgtcgttcacactttcaatccaagcaacaatttcatccacgacctgaa |
24866297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 24866697 - 24866609
Alignment:
| Q |
65 |
aaaatccttaaaccacacaagttttgtaagta-tttatttatc-aannnnnnnnaaaagaaagtgatgtgagccaatgaagtatcccaa |
151 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
24866697 |
aaaatccttaaaccacacaagttttgtaagtattttatttatcaaatctttttaaaaagaaagtgatgtgagccaatgaagtatcccaa |
24866609 |
T |
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