View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5584_low_9 (Length: 443)
Name: NF5584_low_9
Description: NF5584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5584_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 27065416 - 27065832
Alignment:
| Q |
20 |
ctccaagcagttgtatctaagtggcaaatagcaacaccatgattaatctttgccttagaaactggatccaatagatccgcttcatagacatgaacatttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065416 |
ctccaagcagttgtatctaagtggcaaatagcaacaccatgattaatctttgccttagaaactggatccaatagatccgcttcatagacatgaacatttg |
27065515 |
T |
|
| Q |
120 |
gaaccgagtgacagtagtataacaaataaggaaacaaactctggtggcacgacacagattcagtaacttttccaccatttatccccttaactttacccac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27065516 |
gaaccgagtgacagtagtataacaaataaggaaacaaactctggtgacacgatacagattcagtaacttttccaccatttatccccttaactttacccac |
27065615 |
T |
|
| Q |
220 |
catgacatccttgcccgccccatttacattctcagtggatcgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagagaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27065616 |
catgacatccttgcccgccccatttacattctcagtggaccgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagagaa |
27065715 |
T |
|
| Q |
320 |
cccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccaccatcattttgttcatcgaagaattctcggacaccttaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |
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|
| T |
27065716 |
cccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccaccatcatcttattcatcgaagaattctcggacaccttga |
27065815 |
T |
|
| Q |
420 |
aaacctgcttcatctca |
436 |
Q |
| |
|
|||| |||||||||||| |
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|
| T |
27065816 |
aaacttgcttcatctca |
27065832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 27079133 - 27079549
Alignment:
| Q |
20 |
ctccaagcagttgtatctaagtggcaaatagcaacaccatgattaatctttgccttagaaactggatccaatagatccgcttcatagacatgaacatttg |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| | ||||| || ||||| |||||||| ||| |||| |||| |
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|
| T |
27079133 |
ctccaagcagttgtatctaagtgacaaatagcaacaccatgatttatcttcaccttagactcaggatctaaaagatctgcttcataaacacgaacctttg |
27079232 |
T |
|
| Q |
120 |
gaaccgagtgacagtagtataacaaataaggaaacaaactctggtggcacgacacagattcagtaacttttccaccatttatccccttaactttacccac |
219 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||| ||||| || |||||||||||||||||||| || ||||| ||||| ||||| | || || |
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|
| T |
27079233 |
gaaccgagtggcaatagtatagcaaataaggaaacaaactttggtgacatgacacagattcagtaactttacccccattgatccctttaacccttccaac |
27079332 |
T |
|
| Q |
220 |
catgacatccttgcccgccccatttacattctcagtggatcgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagagaa |
319 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||| ||||||||||| ||| || |||||||| ||||||||||| ||||||||||||||||| ||| |
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|
| T |
27079333 |
catgacatttttgcccgatccatttacactctcagttgatcgaacagttacatcatggcccaaaactgaagttgcaaagtcaatcatatcctcaagtgaa |
27079432 |
T |
|
| Q |
320 |
cccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccaccatcattttgttcatcgaagaattctcggacaccttaa |
419 |
Q |
| |
|
|| ||||||||||| || ||||| | |||||| |||||||| ||||||| ||| | ||||| ||||| || | |||||| |||||||| |||||||||| |
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|
| T |
27079433 |
ccaacacaacgctttgtctcacccatactcggtgccctctcacactcacccaatgagtccactatcatcttatccatcgaggaattctcagacaccttaa |
27079532 |
T |
|
| Q |
420 |
aaacctgcttcatctca |
436 |
Q |
| |
|
|||| ||||||| |||| |
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|
| T |
27079533 |
aaacttgcttcaactca |
27079549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 27052973 - 27053386
Alignment:
| Q |
19 |
actccaagcagttgtatctaagtggcaaatagcaacaccatgattaatctttgccttagaaactggatccaatagatccgcttcatagacatgaacattt |
118 |
Q |
| |
|
|||||||||||||||||| ||||| || || |||||||||||||| ||||| ||||||| || ||||| |||| ||||||||| | ||| |||| |
|
|
| T |
27052973 |
actccaagcagttgtatccaagtgacagatcgcaacaccatgatttatcttcaccttagacttagggtccaaaagattcgcttcataaattcgaatattt |
27053072 |
T |
|
| Q |
119 |
ggaaccgagtgacagtagtataacaaataaggaaacaaactctggtggcacgacacagattcagtaacttttccaccatttatccccttaactttaccca |
218 |
Q |
| |
|
|| ||||| |||||||| |||| ||| |||||||||||||| || || || ||||| || || |||| || |||||||||||| |||| |||| ||| | |
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|
| T |
27053073 |
ggcaccgaatgacagtaatatagcaagtaaggaaacaaactttgatgacaagacactgactccataacgttcccaccatttatctcctttacttgaccta |
27053172 |
T |
|
| Q |
219 |
ccatgacatccttgcccgccccatttacattctcagtggatcgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagaga |
318 |
Q |
| |
|
|||| |||| ||| || ||||||||||||||||||||| ||||| || ||| || |||||||| |||||||||||| |||||||| |||||||| || |
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|
| T |
27053173 |
ccataacattgttgttcgacccatttacattctcagtggaccgaaccgtcacattgctacccaaaatagaagttgcaaagtcaatcatgtcctcaagcga |
27053272 |
T |
|
| Q |
319 |
acccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccaccatcattttgttcatcgaagaattctcggacacctta |
418 |
Q |
| |
|
||| ||||||||||| | |||||| ||| ||||| || || ||||||||||| | ||||| ||||| || | ||| | ||||| || |||||||| |
|
|
| T |
27053273 |
acctacacaacgcttgatctcacctttacttggcgctctttcacactcactcaatgagtccactatcatcttttccataaaggaattttcagacaccttg |
27053372 |
T |
|
| Q |
419 |
aaaacctgcttcat |
432 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
27053373 |
aaaacttgcttcat |
27053386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 327
Target Start/End: Complemental strand, 14866523 - 14866315
Alignment:
| Q |
119 |
ggaaccgagtgacagtagtataacaaataaggaaacaaactctggtggcacgacacagattcagtaacttttccaccatttatccccttaactttaccca |
218 |
Q |
| |
|
|||||||||||||| || || | |||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| ||||| ||||| ||||| |
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|
| T |
14866523 |
ggaaccgagtgacaataataaagcaaatacggaaacaaactctgatgacacgaaacagaccgggtcactttcccgccattaatcccattaacccgaccca |
14866424 |
T |
|
| Q |
219 |
ccatgacatccttgcccgccccatttacattctcagtggatcgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagaga |
318 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||| | ||||| ||| | |||||||||| ||||||||||| || ||||||||||||| ||| |
|
|
| T |
14866423 |
ccataacatccttcttcgacccatttacattctcagtagtccgaaccaccacatttcgacccaaaaccgaagttgcaaagtcgatcatatcctcaataga |
14866324 |
T |
|
| Q |
319 |
acccacaca |
327 |
Q |
| |
|
|| ||||| |
|
|
| T |
14866323 |
cccaacaca |
14866315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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