View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585-Insertion-10 (Length: 264)
Name: NF5585-Insertion-10
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585-Insertion-10 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 1338756 - 1338500
Alignment:
| Q |
8 |
gtcattgcatgttgttacatgtcatgtggttagaaaatttgtcttgcttccttcatcatatacctgaactggttttgaatcttatgttttctactccaga |
107 |
Q |
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| T |
1338756 |
gtcattgcatgttgttacatgtcacgtggttagaaaatttgtcttgcttccttcatcattaacctgaactggttttgaatcttatgttttctactccaga |
1338657 |
T |
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| Q |
108 |
gatggtgaattatttggctgactctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtttgc |
207 |
Q |
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| T |
1338656 |
gatggtgaattatttggctgactctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtttgc |
1338557 |
T |
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| Q |
208 |
cacattccaaaggagaaggttccttatctttaattgatattatgtactgttatttta |
264 |
Q |
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| T |
1338556 |
cacattccaaaggagaaggttccctatctttaattgatattatgtactgttatttta |
1338500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 31940572 - 31940327
Alignment:
| Q |
8 |
gtcattgcatgttgttacatgtcatgtggttagaaaatttgtcttgcttccttcatcatatacctgaactggttttgaatcttatgttttctactccaga |
107 |
Q |
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| T |
31940572 |
gtcattgcatgttgttacatgtcatatggttagaaaatctgtcttgcttccttcatcagtaaactgaactggtgttgaatcttgtgttttctactccaga |
31940473 |
T |
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| Q |
108 |
gatggtgaattatttggctgactctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtttgc |
207 |
Q |
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| T |
31940472 |
gatggcgaattattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgc |
31940373 |
T |
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| Q |
208 |
cacattccaaaggagaaggttccttatctttaattgatattatgta |
253 |
Q |
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| T |
31940372 |
cacattccaaagaagaaggtaccgtatcttgaattgatattatgta |
31940327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 13537012 - 13536880
Alignment:
| Q |
105 |
agagatggtgaattatttggctgactctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtt |
204 |
Q |
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| T |
13537012 |
agagatggtgaattattcagctgactatgaaaacacaccaagtggaatgctatatgatcacttcccattggaattaaacaaagatgattatgagagagtc |
13536913 |
T |
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| Q |
205 |
tgccacattccaaaggagaaggttccttatctt |
237 |
Q |
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| T |
13536912 |
tgccacattccacacaagaaggttccctatctt |
13536880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 34 - 261
Target Start/End: Complemental strand, 9390879 - 9390652
Alignment:
| Q |
34 |
tggttagaaaatttgtcttgcttccttcatcatatacctgaactggttttgaatcttatgttttctactccagagatggtgaattatttggctgactctc |
133 |
Q |
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| T |
9390879 |
tggttagaaaatctgtcttgcttccttcatcattaagctgaactggtgttgaatcttgtgttttctactccagagatggtgaattattctgctgactctc |
9390780 |
T |
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| Q |
134 |
aaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaaggagaaggttcctta |
233 |
Q |
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| T |
9390779 |
aaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtatcata |
9390680 |
T |
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| Q |
234 |
tctttaattgatattatgtactgttatt |
261 |
Q |
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| T |
9390679 |
tcttgaattgatattatgtactgttatt |
9390652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 264
Target Start/End: Complemental strand, 5640546 - 5640387
Alignment:
| Q |
105 |
agagatggtgaattatttggctgactctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtt |
204 |
Q |
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| T |
5640546 |
agagatggtgaattacacagctgactctgaaagtgcaccaagtggtctgctgtatgatcacaggccatatctgttaaataacgatgactatgagagagtt |
5640447 |
T |
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| Q |
205 |
tgccacattccaaaggagaaggttccttatctttaattgatattatgtactgttatttta |
264 |
Q |
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| T |
5640446 |
tgcctcattccgaagaagaaggttcctgatcttgaattgatattatgttctgttatttta |
5640387 |
T |
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