View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585-Insertion-3 (Length: 1123)
Name: NF5585-Insertion-3
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585-Insertion-3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 900; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 900; E-Value: 0
Query Start/End: Original strand, 7 - 1080
Target Start/End: Original strand, 46735690 - 46736781
Alignment:
| Q |
7 |
agatattatgtggttcaatgcgatggctgattatggaagtgttatattttatgattatcactcacgtgactaagaaattggaactctatttcaataattt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46735690 |
agatattatgtggttcaatgcgatggctgattatggaagtgttatattctatgattatcactcacgtgactaagaaattggaactctagttcaataattt |
46735789 |
T |
|
| Q |
107 |
gctttaatcttggcgttaaactatgtgcaggttataaatggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgtgggaaattt |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735790 |
gctttaatcttggcgttaaactatgtgcaggttatatgtggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgtgggaaattt |
46735889 |
T |
|
| Q |
207 |
actgttgcgacatgccttatatgaatctaagctttgctgatgcgtcagctgcggttgctgataaggtcagtttatacaatgaaccatgaactctttctat |
306 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735890 |
actgctgcgacatgccttatatgaatctaagctttgctgatgcgtcagctgcggttgctgataaggtcagtttatacaatgaaccatgaactctttctat |
46735989 |
T |
|
| Q |
307 |
ctaccctcatattcttttcatatgagcattttgaatttttcattagcttgtctcaacttggcatgatttattagttattacgtgtttggattggcgtttg |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735990 |
ctaccctcatattcttttcatatgagcattttgaatttttcattagcttgtctcaacttggcatgatttattagttattacgtgtttggattggcgtttg |
46736089 |
T |
|
| Q |
407 |
acatgaatttcgtgagttctaaagccaatccaccctgaaaaaacatacgctaagaattgtggcttctgtacaaacgtgcatctactagactactacaatt |
506 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46736090 |
acatgaatttcatgagttctaaagccaatccaccctgaaaaaacatacgctaagaattgtggcttctgtacaaacgtgcatctactagactactacaatt |
46736189 |
T |
|
| Q |
507 |
gtaccactaaacaaacataggcttagtcatttattagttcctatatatcacacagtaaactctttaggctgtcatcatatgaccataaatattaagtatt |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
46736190 |
gtaccactaaacaaacataggcttagtcatttattagttcctatatatcacacagtaaactctttaggctttcatcatatgaccataaatattaagtatt |
46736289 |
T |
|
| Q |
607 |
tttaactaaatttactcttattaagtatcaaagtattcataagagtgctccctgtaacgccgtcatcttttaatattattttcatccatagacattttct |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
46736290 |
tttaactaaatttactcttattaagtatcaaagtattcataagagtgctccctgtaacgccgtcatcttttaatattattttcatccatagatgttttct |
46736389 |
T |
|
| Q |
707 |
cttgaaatactttattaagtttcatacatcattctaaatttcctatttattataatcaacttttctttcattcttgctcagaatttgagaccagagattc |
806 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46736390 |
cttgaaatactttattaagtttcatacatcattctacatttcctatttattatattcaacttttctttcattcttgctcagaatttgagaccagagattc |
46736489 |
T |
|
| Q |
807 |
ctagatgctgtccaagtgcattagcaggtataatgaaaagatgctgggacaagaatccagaaaagcgtccggaaatgaaagatgtggtgacaatgttgga |
906 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46736490 |
ctagatgctgtccaagtgcattagcagatataatgaaaagatgctgggacaagaatccagaaaagcgtccggaaatgaaagatgtggtgacaatgttgga |
46736589 |
T |
|
| Q |
907 |
agaaattgataca-gcaa-ggaggcggaatgataagaga-gaccagactca--tttgtttt-gttt--aacctgctcgtg-cccata-tagtcatactca |
996 |
Q |
| |
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| ||||||||||| |||| |||||||||||||||||||| |||||||||| |||||||| |||| |||||||||||| |||||| || ||||||||| |
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| T |
46736590 |
aaaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataataatcatactca |
46736689 |
T |
|
| Q |
997 |
tttt---atgagtattattatgtacatta-gta-gtcattgtcgt-tatggaa-tatcggagttgttgtctatgg-aatatcggaggtatgt |
1080 |
Q |
| |
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||| |||||||| ||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
46736690 |
atttttaatgagtataattatgtacattaagtaagtcattgtcgtctatggaaatatcggagttgttgtctatggaaatatcggaggtatgt |
46736781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 5e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 19409748 - 19409586
Alignment:
| Q |
7 |
agatattatgtggttcaatgcgatggctgattatggaagtgttatattttatgattatcactcacgtgactaagaaattggaactctatttcaataattt |
106 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
19409748 |
agatattacgtggttcaatgcgatggctgattatggaagtgttatattttatgaatatcactcacatgactaagaaattggaacactatttcaataattt |
19409649 |
T |
|
| Q |
107 |
gctttaatcttggcgttaaactatgtgcaggttataaatggtaagccttacaacagaagctgt |
169 |
Q |
| |
|
|||| || |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |
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|
| T |
19409648 |
gcttgaaacttggcgttaaaatatgtgcaggttataaatagtaggccttacaacagaagctgt |
19409586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 19409584 - 19409509
Alignment:
| Q |
267 |
ataaggtcagtttatacaatgaaccatgaactctttctatctaccctcatattcttttcatatgagcattttgaat |
342 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| |
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| T |
19409584 |
ataaggtctgtttacacaatgaaccatgaactctttctatctatgctcatattatattcatatgagcattttgaat |
19409509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 19409507 - 19409460
Alignment:
| Q |
399 |
ggcgtttgacatgaatttcgtgagttctaaagccaatccaccctgaaa |
446 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||||| |||| |
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| T |
19409507 |
ggcgtttgatatgaatttcgtgagttctaaagccagtccaccccgaaa |
19409460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 288 - 380
Target Start/End: Original strand, 20428590 - 20428681
Alignment:
| Q |
288 |
aaccatgaactctttctatctaccctcatattcttttcatatgagcattttgaatttttcattagcttgtctcaacttggcatgatttattag |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
20428590 |
aaccatgaactctttctatctaccctcatattattttcatatgagcattttgaatttttcattagcttg-ctcaacttggcaagatttattag |
20428681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 985860 - 985964
Alignment:
| Q |
144 |
atggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgtgggaaatttactgttgcgacatgccttatatgaatctaagctttgc |
243 |
Q |
| |
|
||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||| || || || ||||||||| ||||||||||||| |
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|
| T |
985860 |
atggtaaaccttacaacaggacatgtgatgtatacagctttggcatttgcttgtgggaaatttattgctgtgatatgccttatccagatctaagctttgc |
985959 |
T |
|
| Q |
244 |
tgatg |
248 |
Q |
| |
|
||||| |
|
|
| T |
985960 |
tgatg |
985964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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