View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5585-Insertion-5 (Length: 1031)

Name: NF5585-Insertion-5
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5585-Insertion-5
NF5585-Insertion-5
[»] scaffold1063 (1 HSPs)
scaffold1063 (227-473)||(2855-3106)
[»] chr3 (23 HSPs)
chr3 (7-175)||(6787948-6788121)
chr3 (7-175)||(6942602-6942771)
chr3 (7-175)||(6939427-6939596)
chr3 (493-659)||(6943234-6943408)
chr3 (310-451)||(6943078-6943221)
chr3 (601-733)||(6787326-6787458)
chr3 (769-883)||(6787212-6787325)
chr3 (191-299)||(6939762-6939870)
chr3 (191-299)||(6942937-6943045)
chr3 (691-790)||(6943404-6943503)
chr3 (310-448)||(6939903-6940046)
chr3 (7-158)||(8467055-8467207)
chr3 (586-659)||(6940139-6940212)
chr3 (338-430)||(6787593-6787687)
chr3 (691-790)||(6940208-6940306)
chr3 (709-799)||(6234011-6234101)
chr3 (458-583)||(6787457-6787590)
chr3 (191-258)||(6787696-6787765)
chr3 (660-753)||(6859391-6859485)
chr3 (709-773)||(6138905-6138969)
chr3 (707-782)||(6164220-6164295)
chr3 (709-799)||(13283103-13283193)
chr3 (528-565)||(6940106-6940143)
[»] chr5 (3 HSPs)
chr5 (29-136)||(4314182-4314290)
chr5 (14-66)||(28362649-28362701)
chr5 (37-91)||(42172783-42172837)
[»] chr2 (2 HSPs)
chr2 (20-91)||(6683704-6683775)
chr2 (7-86)||(33720155-33720238)
[»] chr4 (1 HSPs)
chr4 (7-79)||(48681542-48681614)
[»] chr6 (1 HSPs)
chr6 (7-66)||(16519714-16519773)
[»] chr8 (1 HSPs)
chr8 (7-80)||(5354202-5354275)


Alignment Details
Target: scaffold1063 (Bit Score: 190; Significance: 1e-102; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 227 - 473
Target Start/End: Complemental strand, 3106 - 2855
Alignment:
Q  227 aaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaagatatggtagcaacattttggttcataggctttctttaaagt 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  3106 aaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatggtagcagcattttggttcataggctttctttaaagt 3007  T
Q  327 gtaacacgaatgatttttcaagtaattatttcatcagcgg--gtatccatgaattgataaaagcatgcacat-aagcttttgcatgtattttacaca--a 421  Q
     |||| |||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  |    
T  3006 ataactcgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcccataaagcttttgcatgtattttacacaaca 2907  T
Q  422 caaaaaatagagcatttataaatggaaaaatttatttaataaagatgtagtc 473  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2906 caaaaaatagagcatttataaatggaaaaatttatataataaagatgtagtc 2855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 1e-59; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 6788121 - 6787948
Alignment:
Q  7 agttcggccaatattgcctaagtctccgactgcagagcagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaacttgtgtat- 105  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6788121 agttcggccaatattgcctacatctccgactgcagagaagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaacttgtgtata 6788022  T
Q  106 ----aaaactattgttcagattacaacattacccctgaaccgtacccccagtcgccatcacacaataaactatg 175  Q
        || |||||||| ||||||||||||| ||||||||||| |||||||||||||||| |||||| ||||||||    
T  6788021 attaaacactattgtccagattacaacatcacccctgaaccatacccccagtcgccattacacaacaaactatg 6787948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 6942602 - 6942771
Alignment:
Q  7 agttcggccaatattgcctaagtctccgactgcagagcagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaacttgtgtata 106  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  6942602 agttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaacttgtgtata 6942701  T
Q  107 aa-actattgttcagattacaacattacccctgaaccgtacccccagtcgccatcacacaataaactatg 175  Q
    || |||||||| ||||||||||||| | ||||||||||||||||||||||||||||  ||| ||||||||    
T  6942702 aacactattgtccagattacaacatcaaccctgaaccgtacccccagtcgccatcatgcaacaaactatg 6942771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 6939427 - 6939596
Alignment:
Q  7 agttcggccaatattgcctaagtctccgactgcagagcagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaacttgtgtat- 105  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| |||||||     
T  6939427 agttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaacgtgtgtata 6939526  T
Q  106 aaaactattgttcagattacaacattacccctgaaccgtacccccagtcgccatcacacaataaactatg 175  Q
    ||||||||||| ||||||||||||| | || |||||||||||||||||||||||||| ||| ||||||||    
T  6939527 aaaactattgtccagattacaacatcaaccgtgaaccgtacccccagtcgccatcacgcaacaaactatg 6939596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 493 - 659
Target Start/End: Original strand, 6943234 - 6943408
Alignment:
Q  493 atgcattaagttacaaccatacaaagatccatgt--------aaaaactgtgcagcaattagccaagtctccaagggataaatgattgaaacttacctct 584  Q
    |||||||||||| ||||||||||||||||||| |        ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||     
T  6943234 atgcattaagtttcaaccatacaaagatccatatcaatttttaaaaactgtgcagcaattagctaagtctccaagagattaatgattgaaacttacctca 6943333  T
Q  585 tgatatttacgggcattcatgtaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 659  Q
    ||||| |||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6943334 tgataattacaggcattcatgaagaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 6943408  T

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Target: chr3; HSP #5
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 310 - 451
Target Start/End: Original strand, 6943078 - 6943221
Alignment:
Q  310 taggctttctttaaagtgtaacacgaatgatttttcaagtaattatttcatcagcgg--gtatccatgaattgataaaagcatgcacataagcttttgca 407  Q
    ||||||||||||||||||||||  ||| |||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||| |    
T  6943078 taggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaaacatgcacataagcttttgta 6943177  T
Q  408 tgtattttacacaacaaaaaatagagcatttataaatggaaaaa 451  Q
    |||||||||||||| ||||||||||| |||||||||||||||||    
T  6943178 tgtattttacacaataaaaaatagagaatttataaatggaaaaa 6943221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 601 - 733
Target Start/End: Complemental strand, 6787458 - 6787326
Alignment:
Q  601 tcatgtaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagctgattttgaaaacttggctgttaagtcaagacaagctcttgc 700  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| || |||| ||||||||    
T  6787458 tcatgaaaaggaattggatattccataaacgtccgggaggttagcaaacaaaacaagctgattttgaaaacttggttgttaagacaggacatgctcttgc 6787359  T
Q  701 agttactttgttcttcagctgcaatctctcctt 733  Q
    ||||||||||||||||||||||||||| |||||    
T  6787358 agttactttgttcttcagctgcaatctatcctt 6787326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 769 - 883
Target Start/End: Complemental strand, 6787325 - 6787212
Alignment:
Q  769 agcagaatcagcatctaccaatctgaagagaacacagtccacacatgggtcagaggacttttgtagagtggcaggcagtctatttttcaccataaatcaa 868  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||    
T  6787325 agcagaatcagcatctaccaatctgaagagaacacagtccaca--tgggtaagaggacttttgtcgagtggcaggcagtctattattcaccatacatcaa 6787228  T
Q  869 -gaatgaaagtgtgtc 883  Q
      ||||||||||||||    
T  6787227 caaatgaaagtgtgtc 6787212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 191 - 299
Target Start/End: Original strand, 6939762 - 6939870
Alignment:
Q  191 tttgaaattgagaccatattgtcaacaacttgaaacaaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaagatatg 290  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||| |||||    
T  6939762 tttgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacggtatccgtatgcttcatccaaacctacaatatatg 6939861  T
Q  291 gtagcaaca 299  Q
    |||||||||    
T  6939862 gtagcaaca 6939870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 191 - 299
Target Start/End: Original strand, 6942937 - 6943045
Alignment:
Q  191 tttgaaattgagaccatattgtcaacaacttgaaacaaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaagatatg 290  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||| |||||    
T  6942937 tttgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacagtatccgtatgcttcatccaaagctacaatatatg 6943036  T
Q  291 gtagcaaca 299  Q
    |||||||||    
T  6943037 gtagcaaca 6943045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 691 - 790
Target Start/End: Original strand, 6943404 - 6943503
Alignment:
Q  691 aagctcttgcagttactttgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaat 790  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  6943404 aagctcttgcagttactttgttcttgagatgcaatctctccttgacactgatgatgaaatggttgagagggtctcaccagcagaatcagcatctaccaat 6943503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 310 - 448
Target Start/End: Original strand, 6939903 - 6940046
Alignment:
Q  310 taggctttctttaaagtgtaacacgaatgatttttcaagtaattatttcatcagcgg--gtatccatgaattgataaaagcatgcacataagc---tttt 404  Q
    |||||||||||| |||||||||  ||| |||||||||||||||||| ||||||||||  |||||||||||||||||||  |||||||||| ||   ||||    
T  6939903 taggctttctttgaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaagacatgcacatatgcttttttt 6940002  T
Q  405 gcatgtattttacacaacaaaaaatagagcatttataaatggaa 448  Q
    | ||||||||||||||| ||||||||||||||||| ||||||||    
T  6940003 gtatgtattttacacaagaaaaaatagagcatttacaaatggaa 6940046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 8467055 - 8467207
Alignment:
Q  7 agttcggccaatattgcctaagtctccgactgcagagcagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaacttgtgtata 106  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||| | |||||||||| |||||||| |||||||||| |   ||    
T  8467055 agttcggccaatattgcctacgtctccgactgtagagaagctgcagttcctttgtattatcaatgaaagattagggtttacagtgcacaacttatactta 8467154  T
Q  107 aa-actattgttcagattacaacattacccctgaaccgtacccccagtcgcca 158  Q
    || ||||   ||| ||||||||||| | ||| ||||||||||||| |||||||    
T  8467155 aatactacaattctgattacaacatcatcccagaaccgtaccccctgtcgcca 8467207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 586 - 659
Target Start/End: Original strand, 6940139 - 6940212
Alignment:
Q  586 gatatttacgggcattcatgtaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 659  Q
    |||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6940139 gataattacaggcattcatgaaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 6940212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 338 - 430
Target Start/End: Complemental strand, 6787687 - 6787593
Alignment:
Q  338 gatttttcaagtaattatttcatcagcgg--gtatccatgaattgataaaagcatgcacataagcttttgcatgtattttacacaacaaaaaata 430  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||||||||| ||||  |||||| ||||||||||||||||||||| ||||||||    
T  6787687 gatttttcaagtaattatctcatcagcggatgtattcatgaattgataaaaacatgtccataagattttgcatgtattttacacaataaaaaata 6787593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 691 - 790
Target Start/End: Original strand, 6940208 - 6940306
Alignment:
Q  691 aagctcttgcagttactttgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaat 790  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||||||  |||||| |||  ||||||||||||||| |||||||||||||    
T  6940208 aagctctttcagttactt-gttcttcagatgcaatctctccttgacactgatgatgagatggttgagaggatctcaccagcagaatgagcatctaccaat 6940306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 709 - 799
Target Start/End: Original strand, 6234011 - 6234101
Alignment:
Q  709 tgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaatctgaagaga 799  Q
    ||||||||||||||| |||||||| ||| ||||||||||| ||| ||||||  |||||||||||| | |||||| || ||||||| |||||    
T  6234011 tgttcttcagctgcattctctcctcgccgctgatgatgaaatggctgggagaatctcaccagcaggaccagcatttatcaatctgcagaga 6234101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 458 - 583
Target Start/End: Complemental strand, 6787590 - 6787457
Alignment:
Q  458 taataaagatgtagtccaatcaaaatatatattcaatgcattaagttacaaccatacaaagatcca--------tgtaaaaactgtgcagcaattagcca 549  Q
    |||||||| | |||||||||||||||||| ||| |||||||| |||| || |||||||||||||||        | | ||||||||||||| |||||| |    
T  6787590 taataaaggtatagtccaatcaaaatatacattaaatgcattgagtttcacccatacaaagatccatatgaattttttaaaactgtgcagccattagcta 6787491  T
Q  550 agtctccaagggataaatgattgaaacttacctc 583  Q
    ||||||| | |  |||||| ||||||||||||||    
T  6787490 agtctcccaagagtaaatgcttgaaacttacctc 6787457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 6787765 - 6787696
Alignment:
Q  191 tttgaaattgagaccatattgtcaacaacttgaaaca--aaaatggcatctttccataagcatcacagta 258  Q
    |||| |||||| ||||||||||| ||||||| |||||  ||||||||||| |||||||||||||||||||    
T  6787765 tttgcaattgaaaccatattgtcgacaacttcaaacagaaaaatggcatccttccataagcatcacagta 6787696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 660 - 753
Target Start/End: Complemental strand, 6859485 - 6859391
Alignment:
Q  660 gattttgaaaacttggctgttaagtcaagacaagctcttgcagttactt-tgttcttcagctgcaatctctccttgccactgatgatgaattggt 753  Q
    ||||||||||||||| |||| ||| || || | ||| ||||| || ||| ||||||||||||||| ||||||||||| |||||||||||| ||||    
T  6859485 gattttgaaaacttgcctgtcaagacaggagatgctgttgcaatttcttctgttcttcagctgcattctctccttgctactgatgatgaaatggt 6859391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 773
Target Start/End: Original strand, 6138905 - 6138969
Alignment:
Q  709 tgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcag 773  Q
    ||||||||||||||| ||||||||  |||||||||||||| ||| ||||||  ||||||||||||    
T  6138905 tgttcttcagctgcattctctcctcaccactgatgatgaaatggctgggagaatctcaccagcag 6138969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 707 - 782
Target Start/End: Original strand, 6164220 - 6164295
Alignment:
Q  707 tttgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcat 782  Q
    ||||||||||||||||| |||||||| |||||||| ||||||  || ||||||  |||||||||||| | ||||||    
T  6164220 tttgttcttcagctgcattctctcctcgccactgacgatgaaacggctgggagaatctcaccagcaggaccagcat 6164295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 709 - 799
Target Start/End: Complemental strand, 13283193 - 13283103
Alignment:
Q  709 tgttcttcagctgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaatctgaagaga 799  Q
    ||||||||||||||| |||||| |  | ||||||||||||  || ||||||  |||||||||||| | |||||| || ||||||| |||||    
T  13283193 tgttcttcagctgcattctctcatctctactgatgatgaaacggctgggagaatctcaccagcaggaccagcatttatcaatctgcagaga 13283103  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 565
Target Start/End: Original strand, 6940106 - 6940143
Alignment:
Q  528 aaaactgtgcagcaattagccaagtctccaagggataa 565  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  6940106 aaaactgtgcagcaattagctaagtctccaagagataa 6940143  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 4314182 - 4314290
Alignment:
Q  29 tctccgactgcagagcagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaacttgtgtataaa-actattgttcagattacaa 127  Q
    |||| ||||||||||||||||||||||  || |||||| || ||||||||  ||||||||||| | ||||||| | |||| ||||  || ||||||||||    
T  4314182 tctctgactgcagagcagctgcagttctgttgtattatcagcgaaagatttgggtttacaatgtagaacttgtatttaaatactacggtccagattacaa 4314281  T
Q  128 cattacccc 136  Q
     ||||||||    
T  4314282 tattacccc 4314290  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 28362701 - 28362649
Alignment:
Q  14 ccaatattgcctaagtctccgactgcagagcagctgcagttcctttttattat 66  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  28362701 ccaattttgcctatgtctcagactgcagagcagctgcagttcctttgtattat 28362649  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 42172783 - 42172837
Alignment:
Q  37 tgcagagcagctgcagttcctttttattatgagtgaaagattaaggtttacaatg 91  Q
    ||||||||||||| |||||||||  ||||| |||||||||||| || ||||||||    
T  42172783 tgcagagcagctgtagttcctttgaattatcagtgaaagattagggcttacaatg 42172837  T

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Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 6683704 - 6683775
Alignment:
Q  20 ttgcctaagtctccgactgcagagcagctgcagttcctttttattatgagtgaaagattaaggtttacaatg 91  Q
    |||||||  ||| ||||||||||||||||||||||||||| ||||||   | |||||||| |||||||||||    
T  6683704 ttgcctatatcttcgactgcagagcagctgcagttcctttgtattatcgattaaagattagggtttacaatg 6683775  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 33720238 - 33720155
Alignment:
Q  7 agttcggccaatattgcctaagtctccgactgcagagc----agctgcagttcctttttattatgagtgaaagattaaggttta 86  Q
    |||||||||||| |||||||  ||||||||||||||||    ||||||||||||||| ||||||  ||||||| ||| ||||||    
T  33720238 agttcggccaattttgcctacatctccgactgcagagcgagcagctgcagttcctttctattatctgtgaaagtttagggttta 33720155  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 48681614 - 48681542
Alignment:
Q  7 agttcggccaatattgcctaagtctccgactgcagagcagctgcagttcctttttattatgagtgaaagatta 79  Q
    |||||||||||| ||| ||  |||||||| |||||||  |||||||||||||| |||||| |||| |||||||    
T  48681614 agttcggccaattttgtctgcgtctccgaatgcagagtggctgcagttcctttatattatcagtggaagatta 48681542  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 16519773 - 16519714
Alignment:
Q  7 agttcggccaatattgcctaagtctccgactgcagagcagctgcagttcctttttattat 66  Q
    |||||||| |||  ||||||| ||||| || ||||||||| |||||||||||||||||||    
T  16519773 agttcggctaattgtgcctaattctccaacagcagagcagttgcagttcctttttattat 16519714  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 5354202 - 5354275
Alignment:
Q  7 agttcggccaatattgcctaagtctccgactgcagagcagctgcagttcctttttattatgagtgaaagattaa 80  Q
    |||||||||||| |||||||  |||| |||| || |||||||| ||||||||| ||||||  |||||| |||||    
T  5354202 agttcggccaattttgcctacttctctgactacaaagcagctgtagttcctttgtattatcggtgaaaaattaa 5354275  T

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