View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585-Insertion-6 (Length: 517)
Name: NF5585-Insertion-6
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 7 - 515
Target Start/End: Complemental strand, 31856235 - 31855725
Alignment:
| Q |
7 |
attatacacatgtttatttcttcttaaaataaaaaacatcaatgaggattttgagacactaatttttaaaattccaacaggaaagtacgtatttccatag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31856235 |
attatacacatgtttatttcttcttaaaataaaaaacatcaatgaggattttgagacactaatttttaaaattccaacaggaaagtacgtatttccatag |
31856136 |
T |
|
| Q |
107 |
gaccaagctcaacaacaaaatctgaagtgctgacaggactcccccttactgcttgaggttcttgtcctttgtccccttcaaccttccatgtcattttctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31856135 |
gaccaagctcaacaacaaaatctgaagtgctgacaggactcccccttactgcttgaggttcttgtcctttgtccccttcaaccttccatgtcattttctt |
31856036 |
T |
|
| Q |
207 |
catttctgacttctcttggttagctgataaacttacctctttcaactcttttatctgcattattgaaagaaaacttaatttaaattatctagtctaagaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31856035 |
catttctgacttctcttggttagctgataaacttacctctttcaactcttttatctgcattattgaaagaaaacttaatttaaattatctagtctaagaa |
31855936 |
T |
|
| Q |
307 |
agtataatgtacatcacaaagacatgttaaatatgtaccgtttttgtcgcaaacaactttttcagttcaactttggctagagctgaatattgagcatctt |
406 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31855935 |
agtataaagtacatcacaaagacatgttaaatatgtaccgtttttgtcgcaaacaactttttcagttcaactttggctagagctgaatattgagcatctt |
31855836 |
T |
|
| Q |
407 |
catttggctataaccatgttgagaacacaagagttagttacttattacaacttaatcatagtaaaatatgaatatttctaaa--gcggtccacaaatgct |
504 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31855835 |
catttggctataaccacgttgagaacacaagagttagttacttattacaacttaatcatagtaaaatatgaatatttctaaattgcggtccacaaatgct |
31855736 |
T |
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| Q |
505 |
aaggttctaga |
515 |
Q |
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||||||||||| |
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| T |
31855735 |
aaggttctaga |
31855725 |
T |
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