View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5585-Insertion-7 (Length: 390)

Name: NF5585-Insertion-7
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5585-Insertion-7
NF5585-Insertion-7
[»] chr2 (11 HSPs)
chr2 (8-380)||(10547640-10548009)
chr2 (313-380)||(16069268-16069333)
chr2 (318-380)||(20539693-20539753)
chr2 (318-380)||(30404869-30404929)
chr2 (309-374)||(31808063-31808126)
chr2 (344-380)||(6736470-6736506)
chr2 (309-380)||(21616742-21616811)
chr2 (320-379)||(24894370-24894427)
chr2 (313-380)||(28412330-28412395)
chr2 (309-380)||(28677889-28677958)
chr2 (312-380)||(29663989-29664056)
[»] chr7 (6 HSPs)
chr7 (304-380)||(5235966-5236040)
chr7 (303-380)||(26329386-26329461)
chr7 (304-380)||(22602715-22602789)
chr7 (304-380)||(26733284-26733358)
chr7 (344-380)||(21139036-21139072)
chr7 (344-380)||(22484005-22484041)
[»] chr1 (13 HSPs)
chr1 (304-376)||(13997867-13997937)
chr1 (304-380)||(52903229-52903303)
chr1 (312-380)||(5944261-5944329)
chr1 (311-380)||(16927197-16927264)
chr1 (312-380)||(398778-398844)
chr1 (311-371)||(48148049-48148108)
chr1 (310-380)||(5898277-5898345)
chr1 (311-369)||(34257922-34257978)
chr1 (312-381)||(36878440-36878507)
chr1 (311-379)||(2896133-2896199)
chr1 (313-374)||(9033021-9033081)
chr1 (321-377)||(31694732-31694788)
chr1 (318-381)||(46348402-46348463)
[»] chr3 (7 HSPs)
chr3 (304-374)||(40993340-40993409)
chr3 (314-379)||(11610502-11610565)
chr3 (309-373)||(4466610-4466672)
chr3 (319-374)||(23870579-23870632)
chr3 (318-380)||(15796313-15796373)
chr3 (304-373)||(38731205-38731272)
chr3 (312-380)||(8383237-8383303)
[»] chr6 (10 HSPs)
chr6 (309-369)||(8101074-8101134)
chr6 (304-380)||(3398599-3398672)
chr6 (311-380)||(9658859-9658926)
chr6 (310-379)||(677818-677885)
chr6 (318-368)||(8713971-8714020)
chr6 (314-376)||(24645464-24645525)
chr6 (318-374)||(5970127-5970181)
chr6 (312-372)||(17341677-17341735)
chr6 (344-380)||(13851716-13851752)
chr6 (344-380)||(25038114-25038150)
[»] chr5 (6 HSPs)
chr5 (309-380)||(42488063-42488132)
chr5 (321-380)||(15382457-15382516)
chr5 (344-381)||(27144442-27144479)
chr5 (344-380)||(7175062-7175098)
chr5 (309-380)||(15410458-15410527)
chr5 (312-352)||(25888306-25888346)
[»] chr8 (9 HSPs)
chr8 (304-374)||(4786343-4786411)
chr8 (309-374)||(2542434-2542499)
chr8 (318-380)||(4673444-4673504)
chr8 (320-374)||(41838144-41838196)
chr8 (309-374)||(34897071-34897134)
chr8 (318-374)||(29519181-29519235)
chr8 (344-381)||(31109561-31109598)
chr8 (344-380)||(24669413-24669449)
chr8 (309-380)||(36934650-36934719)
[»] scaffold0171 (2 HSPs)
scaffold0171 (312-380)||(23490-23557)
scaffold0171 (312-380)||(23400-23466)
[»] scaffold0136 (1 HSPs)
scaffold0136 (318-380)||(3868-3928)
[»] chr4 (9 HSPs)
chr4 (320-374)||(11651155-11651207)
chr4 (310-380)||(40179647-40179715)
chr4 (306-375)||(21539874-21539941)
chr4 (309-374)||(22440610-22440673)
chr4 (318-360)||(49041880-49041922)
chr4 (306-374)||(903908-903974)
chr4 (309-368)||(1213231-1213287)
chr4 (318-374)||(27706196-27706250)
chr4 (304-359)||(6863154-6863207)
[»] scaffold0022 (1 HSPs)
scaffold0022 (311-380)||(90823-90890)
[»] scaffold0103 (1 HSPs)
scaffold0103 (318-381)||(51790-51851)
[»] scaffold0085 (1 HSPs)
scaffold0085 (309-380)||(26373-26442)
[»] scaffold0050 (1 HSPs)
scaffold0050 (312-379)||(70259-70324)
[»] scaffold0019 (1 HSPs)
scaffold0019 (318-374)||(71709-71765)


Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 10547640 - 10548009
Alignment:
Q  8 gaaagtggaggagacagagagtaaggaggaagatgaagaatgagagacggtgtagtggtagtagtagaggaggcgcggcaaagagaaacgagccatggtg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  10547640 gaaagtggaggagacagagagtaaggaggaagatgaagaatgagagacggtgtagtggtag---tagaggaggcgcggcaaagagaaacgagccatggtg 10547736  T
Q  108 atttgtagggttttgatagaatagaatagaacggggctaaaacccttgcagttaaatctcgcattactttcttttccccgtttcgctctctacttgcacg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10547737 atttgtagggttttgatagaatagaatagaacggggctaaaacccttgcagttaaatctcgcattactttcttttccccgtttcgctctctacttgcacg 10547836  T
Q  208 cattgcaaattacttgttttacaaccaaacaaaaagtaaccaatgtctcctgccacctcttaattacggataattctcgaattagacgtgttccagccga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||    
T  10547837 cattgcaaattacttgttttacaaccaaacaaaaagtaaccaatgtctcctgccacctctgaaatacggacaattctcaaattagacgtgttccagccga 10547936  T
Q  308 tacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10547937 tacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtccgtgtc 10548009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 16069268 - 16069333
Alignment:
Q  313 ataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||| |||||    
T  16069268 ataattacactgaattatatgattttt--ttaaattattaacggtgtcggcgtgtcagtgtccgtgtc 16069333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 20539693 - 20539753
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||| |||||||||||||||  | ||||||||| | ||||||||||||||||||| |||||    
T  20539693 tacactaaattatatgattttt--tcaaattattagctgtgtcgacgtgtcagtgtccgtgtc 20539753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 30404869 - 30404929
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||||||| ||||||||  | ||||||||||| |||||| |||||||||||| |||||    
T  30404869 tacactgaattatgtgattttt--tcaaattattaaccgtgtcggcgtgtcagtgtccgtgtc 30404929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 31808126 - 31808063
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    |||||||| ||||||||||||| |||||||   ||||||||||| ||||||||  |||||||||||    
T  31808126 acatataattacactgaattatgtgatttt--gttaaattattagcggtgtcggtgtgtcagtgtc 31808063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 6736506 - 6736470
Alignment:
Q  344 aaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  6736506 aaattattaccggtgtcgacgtgtcagtgtctttgtc 6736470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 21616811 - 21616742
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||||| ||||||||||||| |||||||   | ||||||||| |||||||| |||||| ||||| |||||    
T  21616811 acatataattacactgaattatgtgatttt--ctcaaattattagcggtgtcggcgtgtccgtgtccgtgtc 21616742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 24894427 - 24894370
Alignment:
Q  320 cactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgt 379  Q
    ||||||||||| ||||||||  ||||||||||| | |||||| |||||||||||| ||||    
T  24894427 cactgaattatgtgattttt--ttaaattattagctgtgtcggcgtgtcagtgtccgtgt 24894370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 28412395 - 28412330
Alignment:
Q  313 ataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||| ||||||||||||| |||||||   | |||||||||||||||| ||||||| |||||| |||||    
T  28412395 ataattacactgaattatgtgatttta--tcaaattattaacggtgttgacgtgttagtgtccgtgtc 28412330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 28677958 - 28677889
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||||| ||||||||||||| |||||||  || ||||||||| |||||||| |||  ||||||| |||||    
T  28677958 acatataattacactgaattatgtgatttt--ttcaaattattagcggtgtcggcgttccagtgtcagtgtc 28677889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 29664056 - 29663989
Alignment:
Q  312 tataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||| ||||||||||||||| || ||| || ||||||||| |  ||||||| ||||||||||||||||    
T  29664056 tataattacactgaattatat-atattttttcaaattattagcactgtcgacatgtcagtgtctgtgtc 29663989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 5236040 - 5235966
Alignment:
Q  304 ccgatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||| |||||| |||||| |||||||| |||||   ||||||||||| |||||||||||||||||||||||||||    
T  5236040 ccgatatatataattacactaaattatataattttc--ttaaattattagcggtgtcgacgtgtcagtgtctgtgtc 5235966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 26329386 - 26329461
Alignment:
Q  303 gccgatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||| |||||||| ||||||||||| | || ||||   | |||||||||||| ||||| ||||||||||||||||||    
T  26329386 gccgacacatataattacactgaattgtgtgtttttc--tcaaattattaacgatgtcggcgtgtcagtgtctgtgtc 26329461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 22602715 - 22602789
Alignment:
Q  304 ccgatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||| |||||||| ||||||||||||| |||||||   | |||| ||| ||||||||| |||||||||| |||||||    
T  22602715 ccgacacatataattacactgaattatgtgatttt--ctcaaataatttacggtgtcggcgtgtcagtgcctgtgtc 22602789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 26733358 - 26733284
Alignment:
Q  304 ccgatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||| |||| ||| || |||||||||| |||||||   | ||||||||| ||||||||||||||||||||| |||||    
T  26733358 ccgacacatttaattagactgaattatgtgattttg--tcaaattattagcggtgtcgacgtgtcagtgtccgtgtc 26733284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 21139036 - 21139072
Alignment:
Q  344 aaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  21139036 aaattattaacggtgttgacatgtcagtgtctgtgtc 21139072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 22484041 - 22484005
Alignment:
Q  344 aaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  22484041 aaattattagcggtgtcggcgtgtcagtgtctgtgtc 22484005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 13997937 - 13997867
Alignment:
Q  304 ccgatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctg 376  Q
    |||| |||||||| ||||||||||||| ||||||||  |||||| ||||||||||||| ||||||||||||||    
T  13997937 ccgacacatataattacactgaattatgtgattttt--ttaaataattaacggtgtcggcgtgtcagtgtctg 13997867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 52903303 - 52903229
Alignment:
Q  304 ccgatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||| |||||||| |||||||||||||||||||||   |||||||||||||||| ||| ||||| |||||| |||||    
T  52903303 ccgacacatataattacactgaattatatgatttt--attaaattattaacggtatcggcgtgttagtgtccgtgtc 52903229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 5944329 - 5944261
Alignment:
Q  312 tataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||| ||||||||||||| |||||||| || ||||||||| | ||| || ||||||||||||||||||    
T  5944329 tataattacactgaattatgtgattttttttcaaattattagctgtggcggcgtgtcagtgtctgtgtc 5944261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 16927197 - 16927264
Alignment:
Q  311 atataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||| |||||||||||||||||||||  || ||||||||| |  || |||||||||||||||||||||    
T  16927197 atataattacactgaattatatgatttt--ttcaaattattagctatgccgacgtgtcagtgtctgtgtc 16927264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 398778 - 398844
Alignment:
Q  312 tataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||| ||||||||||||| ||||||||  | ||||||||| |||||||| |||||||||||| |||||    
T  398778 tataattacactgaattatgtgattttt--tcaaattattagcggtgtcggcgtgtcagtgtccgtgtc 398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 48148049 - 48148108
Alignment:
Q  311 atataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagt 371  Q
    |||||| |||||||||||||||||||||| || ||||||||| ||||||| || |||||||    
T  48148049 atataattacactgaattatatgattttt-ttaaaattattagcggtgtcaacatgtcagt 48148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 5898277 - 5898345
Alignment:
Q  310 catataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||| ||||||||||||| ||||||||  | | ||||||| |||||||| ||| ||||||||||||||    
T  5898277 catataattacactgaattatgtgattttt--tcagattattagcggtgtcggcgtctcagtgtctgtgtc 5898345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 34257922 - 34257978
Alignment:
Q  311 atataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtca 369  Q
    |||||| |||||| |||||| |||||||   ||||||||||||||||||||||||||||    
T  34257922 atataattacactaaattatgtgatttta--ttaaattattaacggtgtcgacgtgtca 34257978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 36878507 - 36878440
Alignment:
Q  312 tataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtcc 381  Q
    ||||| ||||||||||||| |||||||   | ||||||||| |||||||| ||||||||||||| |||||    
T  36878507 tataattacactgaattatgtgattttc--tcaaattattagcggtgtcggcgtgtcagtgtctatgtcc 36878440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 379
Target Start/End: Original strand, 2896133 - 2896199
Alignment:
Q  311 atataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgt 379  Q
    ||||| |||||||||||||| |||||||   | ||||||||| |||||||| |||||||||||| ||||    
T  2896133 atatagctacactgaattatgtgattttc--tcaaattattagcggtgtcggcgtgtcagtgtccgtgt 2896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 9033021 - 9033081
Alignment:
Q  313 ataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    |||| ||||||||||||| |||||||| || |||||||||  ||||| ||||||||||||||    
T  9033021 ataattacactgaattatgtgattttt-ttcaaattattagtggtgttgacgtgtcagtgtc 9033081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 377
Target Start/End: Original strand, 31694732 - 31694788
Alignment:
Q  321 actgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgt 377  Q
    |||||||||| |||||||| || ||||||||| |  ||||||||| |||||||||||    
T  31694732 actgaattatgtgattttttttcaaattattagctatgtcgacgtatcagtgtctgt 31694788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 46348402 - 46348463
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtcc 381  Q
    |||||| |||||||||||||||  | ||||||||| | |||||| |||||||||||| ||||||    
T  46348402 tacactaaattatatgattttt--tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcc 46348463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 40993340 - 40993409
Alignment:
Q  304 ccgatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    |||| |||||||| ||||||||||||| |||||||| |||||||||||| ||||||||| ||||| |||||    
T  40993340 ccgacacatataattacactgaattatgtgattttt-tttaaattattagcggtgtcgaggtgtccgtgtc 40993409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 11610565 - 11610502
Alignment:
Q  314 taactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgt 379  Q
    ||||||||||||||||| ||||||||  ||||||||||| |||||| | ||||||||| |||||||    
T  11610565 taactacactgaattatgtgattttt--ttaaattattagcggtgttggcgtgtcagtatctgtgt 11610502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 4466610 - 4466672
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgt 373  Q
    ||||||| ||||||||||||||||||||||   ||||||||||| ||||||||  ||||||||||    
T  4466610 acatatagctacactgaattatatgatttt--cttaaattattaccggtgtcggagtgtcagtgt 4466672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 23870579 - 23870632
Alignment:
Q  319 acactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    |||||||||||||||||||||  | ||||||||| ||||||||||||||| |||||    
T  23870579 acactgaattatatgattttt--tcaaattattagcggtgtcgacgtgtccgtgtc 23870632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 15796313 - 15796373
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||||||||||||||||||  || ||||||||||| |||||| ||||||| |||| |||||    
T  15796313 tacactgaattatatgatttt--ttcaaattattaactgtgtcggcgtgtcattgtccgtgtc 15796373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 38731272 - 38731205
Alignment:
Q  304 ccgatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgt 373  Q
    |||| |||||||||||||||||||||| |||||||  || ||||||||| |||| ||||| |||| ||||    
T  38731272 ccgacacatataactacactgaattatgtgatttt--ttaaaattattagcggtatcgacatgtcggtgt 38731205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 8383303 - 8383237
Alignment:
Q  312 tataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||| |||||||||||||||||||||   | ||||||||| |||||||| ||||||| |||| |||||    
T  8383303 tataattacactgaattatatgatttt--ctcaaattattagcggtgtcggcgtgtcaatgtccgtgtc 8383237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 8101134 - 8101074
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtca 369  Q
    |||||||| ||||||| |||||||||||||| |||||||||||||  | ||||||||||||    
T  8101134 acatataattacactggattatatgatttttttttaaattattaatagagtcgacgtgtca 8101074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 3398672 - 3398599
Alignment:
Q  304 ccgatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||| ||||| ||||||||||||||||||||   || ||||||||| | |||||| |||||||||||| |||||    
T  3398672 ccgatacttataattacactgaattatatgattt---ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 3398599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 9658926 - 9658859
Alignment:
Q  311 atataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||| ||||||||||||| |||||||   ||||||||||| |||||||| |||||||||||| |||||    
T  9658926 atataattacactgaattatgtgattttc--ttaaattattagcggtgtcggcgtgtcagtgtccgtgtc 9658859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 677885 - 677818
Alignment:
Q  310 catataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgt 379  Q
    ||||||| ||||||  |||||||||||||   | ||||||||||| |||||| |||||||||||||||||    
T  677885 catataaatacactatattatatgattttc--tcaaattattaacagtgtcggcgtgtcagtgtctgtgt 677818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 8714020 - 8713971
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtc 368  Q
    ||||||||||||| |||||||| || ||||||||||| |||||||||||||    
T  8714020 tacactgaattatgtgattttt-ttcaaattattaactgtgtcgacgtgtc 8713971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 376
Target Start/End: Complemental strand, 24645525 - 24645464
Alignment:
Q  314 taactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctg 376  Q
    |||||| |||||||||| |||||||| || ||||||||| | |||||||| ||||||||||||    
T  24645525 taactatactgaattatgtgattttt-ttcaaattattagctgtgtcgacatgtcagtgtctg 24645464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 5970127 - 5970181
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    ||||||||||||| ||||||||  | ||||||||||| ||||||||||||| |||||    
T  5970127 tacactgaattatgtgattttt--tcaaattattaactgtgtcgacgtgtccgtgtc 5970181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 17341677 - 17341735
Alignment:
Q  312 tataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtg 372  Q
    ||||| ||||||||||||| |||||||   | |||||||||||||||||| ||||||||||    
T  17341677 tataattacactgaattatgtgatttta--tcaaattattaacggtgtcggcgtgtcagtg 17341735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 13851752 - 13851716
Alignment:
Q  344 aaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  13851752 aaattattagcggtgtcgacgtgtcagtgtccgtgtc 13851716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 25038114 - 25038150
Alignment:
Q  344 aaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  25038114 aaattattaacggtgtcaacgtgtcagtatctgtgtc 25038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 42488063 - 42488132
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||| ||| |||| |||||||||| |||||   ||||||||| |||||||||||||||||||||||||||||    
T  42488063 acatgtaattacattgaattatataatttta--ttaaattatcaacggtgtcgacgtgtcagtgtctgtgtc 42488132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 380
Target Start/End: Complemental strand, 15382516 - 15382457
Alignment:
Q  321 actgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||||||||||||| || ||||||||| | |||||| ||||||| |||| |||||    
T  15382516 actgaattatatgattttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtc 15382457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 27144479 - 27144442
Alignment:
Q  344 aaattattaacggtgtcgacgtgtcagtgtctgtgtcc 381  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  27144479 aaattattagcggtgtcggcgtgtcagtgtctgtgtcc 27144442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 7175062 - 7175098
Alignment:
Q  344 aaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  7175062 aaattattaacggtgtcgatgtgtcagtgtccgtgtc 7175098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 15410458 - 15410527
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||| | |||||||||| |||| |||||   ||||||||||| |||||||| |||||||||||| |||||    
T  15410458 acatatgattacactgaatcatataattttc--ttaaattattagcggtgtcggcgtgtcagtgtccgtgtc 15410527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 25888306 - 25888346
Alignment:
Q  312 tataactacactgaattatatgatttttatttaaattatta 352  Q
    ||||| |||||||||||||||||||||| || |||||||||    
T  25888306 tataattacactgaattatatgattttttttaaaattatta 25888346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 4786343 - 4786411
Alignment:
Q  304 ccgatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    |||| |||||||| ||||||||||||| |||||||   |||||||||||| ||||||| ||||||||||||    
T  4786343 ccgacacatataattacactgaattatgtgattttc--ttaaattattaatggtgtcggcgtgtcagtgtc 4786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 2542499 - 2542434
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    |||||||| |||||||||| || | |||||| ||||||||||||||| ||||||| |||| |||||    
T  2542499 acatataattacactgaatcatgtaatttttttttaaattattaacgatgtcgacatgtccgtgtc 2542434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 4673444 - 4673504
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||||| ||||||||||  | ||||||||| | |||||| ||||||||||||||||||    
T  4673444 tacactgaattttatgattttt--tcaaattattatctgtgtcggcgtgtcagtgtctgtgtc 4673504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 41838144 - 41838196
Alignment:
Q  320 cactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    ||||||||||| ||||||||  ||||||||||| | |||||||||||||||||||    
T  41838144 cactgaattatgtgattttt--ttaaattattagctgtgtcgacgtgtcagtgtc 41838196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 34897134 - 34897071
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    |||||||| ||||||||||||| |||||||   | ||||||||| ||||||||||||||| |||||    
T  34897134 acatataattacactgaattatgtgattttc--tcaaattattagcggtgtcgacgtgtctgtgtc 34897071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 29519235 - 29519181
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    |||| |||||||||||||||||  | ||||||||| |||||| ||||||||||||||    
T  29519235 tacattgaattatatgattttt--taaaattattatcggtgttgacgtgtcagtgtc 29519181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 31109561 - 31109598
Alignment:
Q  344 aaattattaacggtgtcgacgtgtcagtgtctgtgtcc 381  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  31109561 aaattattaacggtgtcggcgtgtcagtgtccgtgtcc 31109598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 24669449 - 24669413
Alignment:
Q  344 aaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||||||||||||||  ||||||||||||||||||    
T  24669449 aaattattaacggtgtcagcgtgtcagtgtctgtgtc 24669413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 36934719 - 36934650
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||||| |||| |||||||| ||||||||  |  |||||||| |||||||||||||| |||||| |||||    
T  36934719 acatataattacaatgaattatgtgattttt--tcgaattattagcggtgtcgacgtgttagtgtccgtgtc 36934650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 23557 - 23490
Alignment:
Q  312 tataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||| ||||||||||||| |||||||| ||||| |||||||| ||||||  |||||||||| ||||||    
T  23557 tataattacactgaattatgtgattttt-tttaagttattaactgtgtcggtgtgtcagtgtatgtgtc 23490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 23466 - 23400
Alignment:
Q  312 tataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||| ||||||||||||| ||||||||  || | |||||| | |||||| ||||||||||||||||||    
T  23466 tataattacactgaattatgtgattttt--ttgagttattatctgtgtcggcgtgtcagtgtctgtgtc 23400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 3868 - 3928
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||||||| ||||||||  ||||||||||||| |||||| | | ||||||||||||||    
T  3868 tacactgaattatgtgattttt--ttaaattattaaccgtgtcggcatatcagtgtctgtgtc 3928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 11651155 - 11651207
Alignment:
Q  320 cactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    ||||||||||| ||||||||  ||||||||||| | |||||||||||||||||||    
T  11651155 cactgaattatgtgattttt--ttaaattattagctgtgtcgacgtgtcagtgtc 11651207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 40179647 - 40179715
Alignment:
Q  310 catataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||| ||||||||||||| |||||||  || ||| |||||| |||||| ||||||||||||| |||||    
T  40179647 catataattacactgaattatgtgatttt--ttcaaactattaatggtgtcaacgtgtcagtgtccgtgtc 40179715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 21539874 - 21539941
Alignment:
Q  306 gatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtct 375  Q
    |||| |||||| |||||| ||||||||||||||   |||||||||||| ||||||| | |||||||||||    
T  21539874 gatatatataattacactaaattatatgattttc--ttaaattattaatggtgtcggcatgtcagtgtct 21539941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 22440610 - 22440673
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    |||||||| ||||||||||||| |||||||   | ||||||||||||||||||| || ||||||||    
T  22440610 acatataattacactgaattatgtgattttc--tcaaattattaacggtgtcgatgtatcagtgtc 22440673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 49041880 - 49041922
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtc 360  Q
    |||||||||||||||||||||| ||||| |||||||| |||||    
T  49041880 tacactgaattatatgatttttttttaatttattaactgtgtc 49041922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 903974 - 903908
Alignment:
Q  306 gatacatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    ||||||||||| ||||||||||||| |||||||   | ||||||||||||||| ||  |||||||||||    
T  903974 gatacatataattacactgaattatgtgatttt--ctcaaattattaacggtgccggtgtgtcagtgtc 903908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 1213231 - 1213287
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtc 368  Q
    |||||||| ||||||||||||||| ||||   |||||||||||||| ||||| |||||||    
T  1213231 acatataattacactgaattatataattt---tttaaattattaacagtgtcaacgtgtc 1213287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 27706196 - 27706250
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    |||||| |||||| ||||||||  ||||||||||||  |||||||||||||||||||    
T  27706196 tacactaaattatgtgattttt--ttaaattattaattgtgtcgacgtgtcagtgtc 27706250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 6863207 - 6863154
Alignment:
Q  304 ccgatacatataactacactgaattatatgatttttatttaaattattaacggtgt 359  Q
    ||||||||||||| | ||| |||||||||||||||  || ||||||||||||||||    
T  6863207 ccgatacatataattgcaccgaattatatgatttt--ttcaaattattaacggtgt 6863154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 90890 - 90823
Alignment:
Q  311 atataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    |||||| |||||||||||||||||||||   | |||||||||| ||||| |  |||||||||||||||||    
T  90890 atataattacactgaattatatgatttt--ctcaaattattaatggtgttggtgtgtcagtgtctgtgtc 90823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 51851 - 51790
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtcc 381  Q
    ||||||||||||| ||||||||  | ||||||||| | |||||| |||||||||||| ||||||    
T  51851 tacactgaattatgtgattttt--tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcc 51790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 26442 - 26373
Alignment:
Q  309 acatataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgtc 380  Q
    ||||||||| ||| |||||||| |||||||   | |||||||||  ||||||||||||||| ||||||||||    
T  26442 acatataacgacattgaattatgtgattttc--tcaaattattagtggtgtcgacgtgtcactgtctgtgtc 26373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 379
Target Start/End: Complemental strand, 70324 - 70259
Alignment:
Q  312 tataactacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtctgtgt 379  Q
    ||||| ||||||||||||| | ||||||  | ||||||||||| |||||||| |||| ||||||||||    
T  70324 tataattacactgaattatgttattttt--tcaaattattaactgtgtcgacatgtctgtgtctgtgt 70259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 71765 - 71709
Alignment:
Q  318 tacactgaattatatgatttttatttaaattattaacggtgtcgacgtgtcagtgtc 374  Q
    ||||||||||| | |||||||| || ||||||||| | |||||| ||||||||||||    
T  71765 tacactgaattgtgtgattttttttcaaattattagctgtgtcggcgtgtcagtgtc 71709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University