View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585-Insertion-8 (Length: 290)
Name: NF5585-Insertion-8
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 2717752 - 2717471
Alignment:
| Q |
8 |
ggatgttctttatgtagaataatattttaccaattcccagattctactaccctgatacacttgaaataatattttaccaatctcaatgatatccatagga |
107 |
Q |
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| T |
2717752 |
ggatgttctttatgtagaataatattttaccaattcccagattctactaccttgatacacttgaaataatattttaccaatctcaatgatatccatagga |
2717653 |
T |
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| Q |
108 |
ctgtggctgtgcttgctttacnnnnnnnnnnnnnaagaactaatttgcaagatagccataataaaatttgtaggttcgtggacagtcaaaacaagtaggt |
207 |
Q |
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| T |
2717652 |
ctgtggctgtgcttgctttactttttttttttt-aagaactaatttgcaagatagccataataaaatttgtaggttcgtggacagtcaaaacaagtaggt |
2717554 |
T |
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| Q |
208 |
agccaatattacttatctacgtgtgctaatataaatgcatattcctttggcttttcattagctcccttttcccccatttcacc |
290 |
Q |
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| T |
2717553 |
agccaatattacttatctacgtgtgctaatataaatgcatattcctttggcttttcattagctcccttttcccccatttcacc |
2717471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 7321695 - 7321976
Alignment:
| Q |
8 |
ggatgttctttatgtagaataatattttaccaattcccagattctactaccctgatacacttgaaataatattttaccaatctcaatgatatccatagga |
107 |
Q |
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| T |
7321695 |
ggatgttctttatgtagaataatattttaccaattcccagattctactaccttgatacacttgaaataatattttaccaatctcaatgatatccatagga |
7321794 |
T |
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| Q |
108 |
ctgtggctgtgcttgctttacnnnnnnnnnnnnnaagaactaatttgcaagatagccataataaaatttgtaggttcgtggacagtcaaaacaagtaggt |
207 |
Q |
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| T |
7321795 |
ctgtggctgtgcttgctttacttttttttttt--aagaactaatttgcaagattgccataataaaatttgtaggttcg-ggacagtcaaaacaagtaggt |
7321891 |
T |
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| Q |
208 |
agccaatattacttatctacgtgtgctaatataaatgcatattcctttggctt--ttcattagctcccttttcccccatttcacc |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
7321892 |
agccaatattacttatctacgtgtgctaatataaatgcatattcctttggctttatccattagctcccttttcccccatttcacc |
7321976 |
T |
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