View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5585_high_16 (Length: 366)
Name: NF5585_high_16
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 10239576 - 10239934
Alignment:
| Q |
1 |
tggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239576 |
tggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgc |
10239675 |
T |
|
| Q |
101 |
cgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgccttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239676 |
cgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgccttt |
10239775 |
T |
|
| Q |
201 |
aatgactttgcattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239776 |
aatgactttgcattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtct |
10239875 |
T |
|
| Q |
301 |
atgaagatgttgataatgtcatcgagtgtgttgagtattagtgctgatattgatgatgt |
359 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10239876 |
atgaaggtgttgatgatgtcatcgagtgtgttgagtattagtgctgagattgatgatgt |
10239934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 10255029 - 10254684
Alignment:
| Q |
1 |
tggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||| |||| ||| || |||||||||| |
|
|
| T |
10255029 |
tggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgc |
10254930 |
T |
|
| Q |
101 |
cgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgccttt |
200 |
Q |
| |
|
| |||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254929 |
catcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgccttt |
10254830 |
T |
|
| Q |
201 |
aatgactttgcattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254829 |
aatgactttgcattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtct |
10254730 |
T |
|
| Q |
301 |
atgaagatgttgataatgtcatcgagtgtgttgagtattagtgctg |
346 |
Q |
| |
|
|||||| ||||||| ||||| |||| |||||||| || |||||||| |
|
|
| T |
10254729 |
atgaaggtgttgatgatgtcgtcgaatgtgttgaatagtagtgctg |
10254684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 10230796 - 10231154
Alignment:
| Q |
1 |
tggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgc |
100 |
Q |
| |
|
|||| |||||||| |||||| |||||||| || ||||||| || ||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||| |
|
|
| T |
10230796 |
tggtgaccagctttgttttcaattttgtacttgtaggtttttacataacggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgc |
10230895 |
T |
|
| Q |
101 |
cgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgccttt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| || ||||| ||||| |
|
|
| T |
10230896 |
cgtcaccgtcaaagagatggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgtaaagtgacggcgggagtgtaccttt |
10230995 |
T |
|
| Q |
201 |
aatgactttgcattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtct |
300 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10230996 |
gatgattacacattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtct |
10231095 |
T |
|
| Q |
301 |
atgaagatgttgataatgtcatcgagtgtgttgagtattagtgctgatattgatgatgt |
359 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231096 |
atgaaggtgttgataatgtcatcgagtgtgttgagtattagtgctgatattgatgatgt |
10231154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University