View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_high_21 (Length: 285)
Name: NF5585_high_21
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 37 - 270
Target Start/End: Complemental strand, 30100852 - 30100616
Alignment:
| Q |
37 |
gtccaaatccttgtgaatacta---actagtacactttcacatacatgttcaatcctatatatatgacataactagctaggacactcaaaatggaagttc |
133 |
Q |
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| T |
30100852 |
gtccaaatccctgtgaatactactgactagtacactttcacatacatgttcaatcctatatatatgacataactagctaggacactcaaaatggaagttc |
30100753 |
T |
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| Q |
134 |
ataccaaactacatgcaattatttcaaggaatatggtcccacaaagtttgcagattttttatggccagaaaaatttagaataactcatacaattccagtt |
233 |
Q |
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| T |
30100752 |
atgccaaactacatgcaattatttcaaggaatatggtcccacaaagtttgcagattttttatggccagaaaaatttagaataactcatacgattccagtt |
30100653 |
T |
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| Q |
234 |
ggtgccactacaataggacttctaacaatgtgtgctc |
270 |
Q |
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| T |
30100652 |
ggtgccactacaataggacttctaacaatgtgtgctc |
30100616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 30086995 - 30087044
Alignment:
| Q |
217 |
ctcatacaattccagttggtgccactacaataggacttctaacaatgtgt |
266 |
Q |
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| T |
30086995 |
ctcatataattccagttggtgccactacaataggacttctaacagtgtgt |
30087044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 30090247 - 30090300
Alignment:
| Q |
217 |
ctcatacaattccagttggtgccactacaataggacttctaacaatgtgtgctc |
270 |
Q |
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| T |
30090247 |
ctcatataattccccttggtgccactacaataggacttctaacagtgtgtgctc |
30090300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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