View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_high_24 (Length: 264)
Name: NF5585_high_24
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 26011035 - 26010806
Alignment:
| Q |
1 |
tattattggcaaaatttgaaatttgtcaaagagaaccaaagtcaacacaaattcaacattcctataaccatttaataattaataactcataaatctatcg |
100 |
Q |
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| T |
26011035 |
tattattggcaaaatttgaaatttgtcaaagagaaccaaagtcaacacaaattcaacattcctataaccatttaacaattaataactca--aatctat-- |
26010940 |
T |
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| Q |
101 |
aaaacacagaaggatttgacaaccattgtaagttcgtcggagagggtgcagatagaaacaaaatcaatggatatcataagccacaatgcgttttctctat |
200 |
Q |
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| T |
26010939 |
-----------ggatttgacaaccattgtaagttcgtcggagagggtgcagatagaaacaaaatgaatggatatcacaagccacaatgcgttttctctat |
26010851 |
T |
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| Q |
201 |
aaactctggtaatggagagaacgtggccattcaacaagaggtgtatt |
247 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26010850 |
aaactctggtaatg--gagaacgtggccattcaacaagaggtgtatt |
26010806 |
T |
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