View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_high_28 (Length: 243)
Name: NF5585_high_28
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39520512 - 39520752
Alignment:
| Q |
1 |
cactaactccattcctgagaactcccttataaacaattccaaaaccaccctttccaattatcctcttcacattgaaattatcagttgcaaattgaagatc |
100 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||||||| |
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| T |
39520512 |
cactaactccattcgtgaggactcccttataaacaattccaaaaccaccctttccaataatcctctttgcatcgaaattatccgttgcaaattgaagatc |
39520611 |
T |
|
| Q |
101 |
aagcaaggggattttcaatccaagatttatgttaggtaaaggtgagccttgaatggatgttgcatcagttaatctgccgtgagaactccctcctctggca |
200 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39520612 |
aagcaaagggattttcaatccaaggtttatgttaggtaaaggtgagccttgaattgttgttgcatcagttaatctgctgtgagaactccctcctctggca |
39520711 |
T |
|
| Q |
201 |
gctggaatgggcaaccatttggaattctcaacaggcctttg |
241 |
Q |
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| T |
39520712 |
gctggaatgggcaaccattcggaattctcaacaggcctttg |
39520752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39510254 - 39510494
Alignment:
| Q |
1 |
cactaactccattcctgagaactcccttataaacaattccaaaaccaccctttccaattatcctcttcacattgaaattatcagttgcaaattgaagatc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||| ||||||||||| |
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| T |
39510254 |
cactaactccattcctgagaactcccttataaacaattccaaaaccaccctttccaattatcctctttgcatcaaagttatccgttgcgaattgaagatc |
39510353 |
T |
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| Q |
101 |
aagcaaggggattttcaatccaagatttatgttaggtaaaggtgagccttgaatggatgttgcatcagttaatctgccgtgagaactccctcctctggca |
200 |
Q |
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| T |
39510354 |
aagcaaggggattttcaatccgaggtttatgttaggtaaaggggagccttgaattgctgttgcatcagttaatctgctgtgagaactccctcctctggca |
39510453 |
T |
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| Q |
201 |
gctggaatgggcaaccatttggaattctcaacaggcctttg |
241 |
Q |
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|||||||| |||||||||| |||||| |||||||||||||| |
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| T |
39510454 |
gctggaattggcaaccattcggaattttcaacaggcctttg |
39510494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 39524092 - 39524237
Alignment:
| Q |
96 |
agatcaagcaaggggattttcaatccaagatttatgttaggtaaaggtgagccttgaatggatgttgcatcagttaatctgccgtgagaactccctcctc |
195 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||| ||||||| |
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| T |
39524092 |
agatcaagcaaagggattttcaatccaaggtttatgttaggtaaaggcgagccttgaattgttgttgcatcagttaatctgctgtgagaacttcctcctc |
39524191 |
T |
|
| Q |
196 |
tggcagctggaatgggcaaccatttggaattctcaacaggcctttg |
241 |
Q |
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| T |
39524192 |
tggcagctggaataggcaaccattcggacttctcaacaggcctttg |
39524237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 39575158 - 39575391
Alignment:
| Q |
8 |
tccattcctgagaactcccttataaacaattccaaaaccaccctttccaattatcctcttcacattgaaattatcagttgcaaattgaagatcaagcaag |
107 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||| || || || | |||||| ||||||||| |
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| T |
39575158 |
tccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctcggtggcgatttgaaggtcaagcaag |
39575257 |
T |
|
| Q |
108 |
gggattttcaatccaagatttatgttaggtaaaggtgagccttgaatggatgttgcatcagttaatctgccgtgagaactccctcctctggcagctggaa |
207 |
Q |
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| |||||||| ||||| ||||||||||||||||||||||||||| | | | || ||| ||||||| ||| |||||| |||||||| |||| ||||| |
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| T |
39575258 |
gagattttcatgccaaggtttatgttaggtaaaggtgagccttgagttgtttttccataagttaatttgctatgagaaatccctcctgcagcagttggaa |
39575357 |
T |
|
| Q |
208 |
tgggcaaccatttggaattctcaacaggcctttg |
241 |
Q |
| |
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| |||||| | | | || |||||||||||||||| |
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| T |
39575358 |
tcggcaacaaatcgaaactctcaacaggcctttg |
39575391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 39579694 - 39579838
Alignment:
| Q |
8 |
tccattcctgagaactcccttataaacaattccaaaaccaccctttccaattatcctcttcacattgaaattatcagttgcaaattgaagatcaagcaag |
107 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||||| | | ||| ||||| || ||||| |||||||||||||||||| |
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| T |
39579694 |
tccattcttgagaactcccttataaacatttccaaaaccaccttttccgattatcctatccgcatcaaaattctctgttgcgaattgaagatcaagcaag |
39579793 |
T |
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| Q |
108 |
gggattttcaatccaagatttatgttaggtaaaggtgagccttga |
152 |
Q |
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| |||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
39579794 |
gagattttcaggccaaggtttatgttaggtaaaggcgagccttga |
39579838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 39543323 - 39543467
Alignment:
| Q |
8 |
tccattcctgagaactcccttataaacaattccaaaaccaccctttccaattatcctcttcacattgaaattatcagttgcaaattgaagatcaagcaag |
107 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||| || || || | |||||| ||||||||| |
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| T |
39543323 |
tccattcttgagaactcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctcggtggcgatttgaaggtcaagcaag |
39543422 |
T |
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| Q |
108 |
gggattttcaatccaagatttatgttaggtaaaggtgagccttga |
152 |
Q |
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| T |
39543423 |
gagattttcatgccaaggtttatgttaggtaaaggtgagccttga |
39543467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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