View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_high_34 (Length: 231)
Name: NF5585_high_34
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 39510016 - 39510241
Alignment:
| Q |
1 |
atacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||| |||||||||||||||||||||| |
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| T |
39510016 |
atacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgcaccttacaaactttctttaagtgtccccttttccatgtactcataaacaa |
39510115 |
T |
|
| Q |
101 |
gtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
39510116 |
gtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgtcgatgacgaatctttgacaaaaccattatctcagtctgaaattcaggtag |
39510215 |
T |
|
| Q |
201 |
tccttgacctgaccctggctcacttc |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
39510216 |
tccttgacctgaccctggctcacttc |
39510241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 39520340 - 39520499
Alignment:
| Q |
67 |
ctaagtgtcccattttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttg |
166 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
39520340 |
ctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatcttgg |
39520439 |
T |
|
| Q |
167 |
acaaaaccattatctcagtttgaaattcaggcagtccttgacctgaccctggctcacttc |
226 |
Q |
| |
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| T |
39520440 |
acaaaaccattatctcagtctgaaattcaggcagaccttgacctgatcctggctcacttc |
39520499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 39579449 - 39579663
Alignment:
| Q |
1 |
atacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| || | |||||| | | ||| |||||||||| |||||||| || |||||||||| |
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| T |
39579449 |
atacaaatctcaagcctttgcttccaagtcaaaaaactaggcaaacttttattgtacaaattctctttaagtgtccctttttccatatattcataaacaa |
39579548 |
T |
|
| Q |
101 |
gtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcag |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||| || |
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| T |
39579549 |
gtatcatctcatacccttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagcttcaaattcaggaag |
39579648 |
T |
|
| Q |
201 |
tccttgacctgaccc |
215 |
Q |
| |
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||||||||||||||| |
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|
| T |
39579649 |
tccttgacctgaccc |
39579663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 39574919 - 39575131
Alignment:
| Q |
4 |
caaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaagta |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| | ||||| | ||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
39574919 |
caaatctcaagcctttgcttccaagtcaa---acaaggcaaatttgtatcgtacaaattatctctaagtgtcccattttccatgtactcgtaaacaagta |
39575015 |
T |
|
| Q |
104 |
tcatctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtcc |
203 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | |||| |
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|
| T |
39575016 |
tcatctcacacctttcatcacaatatgcaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagtttgaaattcatgacgtcc |
39575115 |
T |
|
| Q |
204 |
ttgacctgaccctggc |
219 |
Q |
| |
|
||||||||| |||||| |
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| T |
39575116 |
ttgacctgaacctggc |
39575131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 39543084 - 39543303
Alignment:
| Q |
4 |
caaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaagta |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| | |||| | | | || |||||||| |||||||||||||||||||||||||||| |
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| T |
39543084 |
caaatctcaagcctttgcttccaagtcaa---acaaggcaaatttgtattgtataaattctccctaagtgtaccattttccatgtactcataaacaagta |
39543180 |
T |
|
| Q |
104 |
tcatctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtcc |
203 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| | |||| |
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| T |
39543181 |
tcatctcacacctttcatcacaataccctattaaggaaacaaggtgtttgtgacgaatcttggacagaaccattatctcagtttgaaattcatgttgtcc |
39543280 |
T |
|
| Q |
204 |
ttgacctgaccctggctcacttc |
226 |
Q |
| |
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||||||||| || ||| |||||| |
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|
| T |
39543281 |
ttgacctgaacccggcacacttc |
39543303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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