View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5585_high_37 (Length: 218)
Name: NF5585_high_37
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_high_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 1981699 - 1981513
Alignment:
| Q |
14 |
caaaggaaaaatatatataactggtattttgttttttcaaatgatacacgtgcaacacattcttgctcttcgtttacagaaatcctagtaagtatagcaa |
113 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1981699 |
caaaggaaaaatatata--actaatattttgttttttcaaatgatacacgtgcaacacattcttgcttttcgtttacagaaatcctagtaagtatagcaa |
1981602 |
T |
|
| Q |
114 |
ctctcaatatagatagatagatgagattcagattccctttcaaaagcatcacccagttaagttggccaatttgggaatgcattccaagt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1981601 |
ctctcaatatagatagatagatgagattcagattccctttcaaaagcatcacccagttaagttggccaatttgggaatgcattccaagt |
1981513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University