View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_high_38 (Length: 210)
Name: NF5585_high_38
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 39143074 - 39142889
Alignment:
| Q |
14 |
atcactagtacaatttattgaaggaagactcat------ggaggtgaggtccaaggaagtcgcatgttaaaactggctagccactttttaatctcgaaca |
107 |
Q |
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| T |
39143074 |
atcacgagtacaatttattgaaggaagactcatacatatggaggtgaggtccaaggaagtcgcatgttaaaactggctagccactttttaatctcgaaca |
39142975 |
T |
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| Q |
108 |
aatatttgagttccatatgacaccttttgtcatcatcttcaaaccgtaaaacatcaaccaaaagagtaaagagtttatgcatcaat |
193 |
Q |
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| T |
39142974 |
aatatttgagttccatatgacaccttttgtcatcatcttcaaaccgtaaaacatcaaccaaaagagtaaagagtttatgcatcaat |
39142889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 39134593 - 39134496
Alignment:
| Q |
92 |
tttttaatctcgaacaaatatttgagttccatatgacaccttttgtcatcatcttcaaaccgtaaaacatcaaccaaaagagtaaagagtttatgcat |
189 |
Q |
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| T |
39134593 |
tttttaatctcgaacaaatatttgagttccatatgacaccttttgtcatcatcttcaaactgtaaaacatcaaccaaaagagtaaagagtttatgcat |
39134496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 39138352 - 39138313
Alignment:
| Q |
136 |
gtcatcatcttcaaaccgtaaaacatcaaccaaaagagta |
175 |
Q |
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| T |
39138352 |
gtcatcatcttcaaaccgtaaaacatcgaccaaaatagta |
39138313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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