View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5585_high_4 (Length: 683)

Name: NF5585_high_4
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5585_high_4
NF5585_high_4
[»] chr2 (8 HSPs)
chr2 (1-672)||(39529414-39530088)
chr2 (395-494)||(12807569-12807668)
chr2 (418-494)||(21579651-21579727)
chr2 (418-489)||(10289507-10289578)
chr2 (461-495)||(26246035-26246069)
chr2 (461-495)||(45717774-45717808)
chr2 (426-495)||(1842144-1842213)
chr2 (261-301)||(27270331-27270371)
[»] chr1 (8 HSPs)
chr1 (456-668)||(48587532-48587746)
chr1 (213-262)||(35201489-35201538)
chr1 (213-253)||(35202385-35202425)
chr1 (461-495)||(14976179-14976213)
chr1 (261-295)||(39298388-39298422)
chr1 (461-497)||(19579976-19580012)
chr1 (218-258)||(38617289-38617329)
chr1 (218-258)||(40805934-40805974)
[»] chr3 (10 HSPs)
chr3 (379-534)||(43284754-43284909)
chr3 (447-512)||(43754610-43754675)
chr3 (393-468)||(25145369-25145444)
chr3 (517-592)||(46632540-46632614)
chr3 (441-495)||(35273709-35273763)
chr3 (395-492)||(1709771-1709868)
chr3 (438-486)||(9510383-9510431)
chr3 (438-486)||(9518358-9518406)
chr3 (261-333)||(43284636-43284708)
chr3 (276-336)||(43754445-43754505)
[»] chr8 (8 HSPs)
chr8 (378-494)||(37040262-37040377)
chr8 (446-494)||(37165590-37165638)
chr8 (419-497)||(23447988-23448066)
chr8 (261-298)||(13447659-13447696)
chr8 (440-497)||(25320431-25320488)
chr8 (443-495)||(15014114-15014166)
chr8 (426-494)||(24794369-24794437)
chr8 (213-253)||(33520903-33520943)
[»] chr7 (8 HSPs)
chr7 (418-494)||(16559111-16559187)
chr7 (418-494)||(16606475-16606551)
chr7 (261-335)||(17195272-17195346)
chr7 (437-499)||(32815775-32815837)
chr7 (265-298)||(18342282-18342315)
chr7 (261-297)||(1396350-1396386)
chr7 (435-499)||(2678819-2678883)
chr7 (390-438)||(9095720-9095768)
[»] chr5 (4 HSPs)
chr5 (545-668)||(10167623-10167747)
chr5 (418-486)||(12832513-12832581)
chr5 (418-486)||(12864488-12864556)
chr5 (218-258)||(41663303-41663343)
[»] chr4 (4 HSPs)
chr4 (426-488)||(20509421-20509483)
chr4 (261-298)||(16698726-16698763)
chr4 (446-495)||(26892200-26892249)
chr4 (426-494)||(42952954-42953022)
[»] chr6 (3 HSPs)
chr6 (270-300)||(12249436-12249466)
chr6 (441-499)||(28575925-28575983)
chr6 (418-487)||(2540584-2540653)


Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 672
Target Start/End: Complemental strand, 39530088 - 39529414
Alignment:
Q  1 ggagactagcgttgataaactttatttctccgatggacggtggacggggacacgaccttgaggattggcctccgccgtatgagcattgtgaatgtttttc 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||    
T  39530088 ggagactggcgttgataaactttatttctccgatggacggtggacggggacacgactttgaggactggcctccgccgtatgagcatcgtgaatgtttttc 39529989  T
Q  101 tgtttagattggaatgnnnnnnnnnnnnnnnnaattaaaatgtttgaattaatgttaaataaatctgggccattgataaacttttttacacgtgtcagtt 200  Q
    |||||||||  |||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39529988 tgtttagatcagaatgttttttgtgtttttttaattaaaatgtttgaattaatgttaaataaatctgggccattgataaacttttttacacgtgtcaatt 39529889  T
Q  201 gtgtatggctataaattgagattgccatttactcaccaaatggagaggatctggactccatctcttctggtctactttatttccttcttcaaggctccta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |    
T  39529888 gtgtatggctataaattgagattgccatttactcaccaaatggagaggatctggactccatctcttccggtctactttctttccttcttcaaggctccca 39529789  T
Q  301 tgtgtatcacttcttctctagaacctttatttaatcgcnnnnnnnnnnn---ggtggtgacaattctaaaatatttttcaagattgattgcgatactatt 397  Q
      |||||||||||||||||||||| |||||||||||||              |||||||||||||||||||||||||||| |||||||||||||||||||    
T  39529788 catgtatcacttcttctctagaacttttatttaatcgcttttttttttttttggtggtgacaattctaaaatatttttcaggattgattgcgatactatt 39529689  T
Q  398 tgtttggataaggagttttatggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggataaag 497  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39529688 tgtttggataaggagttttatagtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggataaag 39529589  T
Q  498 ggaggtgtggtataaggtattgagggtgaaatgtggtcagaaggggggcacttgaaggagggggtagggatagttttgtttggtggaaggagttgatgtg 597  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39529588 ggaggtgtggtataaggtattgagggtgaaatatggtcagaaggggggcacttgaaggagggggtagggatagttttatttggtggaaggagttgatgtg 39529489  T
Q  598 gatcagtaatgatattgggttctgggagggaagttggtttgaacggaaattaaggagggtggtgggtgatgatgt 672  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  39529488 gatcagtaatgatattgggttctgggagggaaattggtttgaacgaaaattaaagagggtggtgggtgatgatgt 39529414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 395 - 494
Target Start/End: Original strand, 12807569 - 12807668
Alignment:
Q  395 atttgtttggataaggagttttatggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggata 494  Q
    |||||||||||||||||| ||  ||||||  |||||| |||||| || ||||||||| | ||||| ||||| ||||| ||||||||  ||||||||||||    
T  12807569 atttgtttggataaggaggttggtggtttaggggttatgagaattagggagtttaatttatctctgttagggaagtggtgttggagattgttggtggata 12807668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 494
Target Start/End: Complemental strand, 21579727 - 21579651
Alignment:
Q  418 tggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggata 494  Q
    |||||||||||| |||||||| || |||||||||| | || | ||||| ||||| ||||||||| || |||||||||    
T  21579727 tggtttgagggtaaggagaattagggagtttaatagtgctttattagggaagtggtgttggaggttgctggtggata 21579651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 489
Target Start/End: Original strand, 10289507 - 10289578
Alignment:
Q  418 tggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggt 489  Q
    ||||||| |||| |||||||| |||||||||||  | ||| | ||||| ||||| |||||||||||||||||    
T  10289507 tggtttgggggtcaggagaattagagagtttaacttgtctttgttaggtaagtggtgttggaggatgttggt 10289578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 26246035 - 26246069
Alignment:
Q  461 ttaggaaagtgatgttggaggatgttggtggataa 495  Q
    ||||||||||| |||||||||||||||||||||||    
T  26246035 ttaggaaagtggtgttggaggatgttggtggataa 26246069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 45717808 - 45717774
Alignment:
Q  461 ttaggaaagtgatgttggaggatgttggtggataa 495  Q
    ||||||||||| |||||||||||||||||||||||    
T  45717808 ttaggaaagtggtgttggaggatgttggtggataa 45717774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 495
Target Start/End: Original strand, 1842144 - 1842213
Alignment:
Q  426 gggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggataa 495  Q
    ||||||||||| || |||  |||||| | ||| | || |||||||| |||||||||||||||||||||||    
T  1842144 gggttaggagagtgggagcttttaatttatctttgttgggaaagtggtgttggaggatgttggtggataa 1842213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 27270331 - 27270371
Alignment:
Q  261 tctcttctggtctactttatttccttcttcaaggctcctat 301  Q
    ||||||| | |||||||||||||||||||||| ||||||||    
T  27270331 tctcttccgatctactttatttccttcttcaaagctcctat 27270371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 456 - 668
Target Start/End: Complemental strand, 48587746 - 48587532
Alignment:
Q  456 ctcttttaggaaagtgatgttggaggatgttggtggataaagggaggtgtggtataaggtattgagggtgaaatgtggtcagaagggg-ggcacttgaag 554  Q
    ||||||||  |||||| ||  ||||||||||||||  ||||||| | ||||||||| ||| |||| |||||||| |||| || || |  ||| || ||||    
T  48587746 ctcttttaaaaaagtggtgccggaggatgttggtgattaaagggggttgtggtatacggtgttgatggtgaaatatggtgaggagtgatggcgctcgaag 48587647  T
Q  555 gag-ggggtagggatagttttgtttggtggaaggagttgatgtggatcagtaatgatattgggttctgggagggaagttggtttgaacggaaattaagga 653  Q
    ||| ||||||| |||   ||||||||||||||||||||| |||||||| ||||||| ||||||||| | || |||||||| ||||||  ||| ||||| |    
T  48587646 gagaggggtagagatgagtttgtttggtggaaggagttggtgtggatctgtaatgacattgggttcggagaaggaagttgatttgaagagaatttaagaa 48587547  T
Q  654 gggtggtgggtgatg 668  Q
     ||||||||||||||    
T  48587546 aggtggtgggtgatg 48587532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 35201538 - 35201489
Alignment:
Q  213 aaattgagattgccatttactcaccaaatggagaggatctggactccatc 262  Q
    |||||||||| ||||||||||| |||||||||||||||||| || |||||    
T  35201538 aaattgagatggccatttactccccaaatggagaggatctgcaccccatc 35201489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 35202385 - 35202425
Alignment:
Q  213 aaattgagattgccatttactcaccaaatggagaggatctg 253  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  35202385 aaattgagatggccatttcctcaccaaatggagaggatctg 35202425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 14976179 - 14976213
Alignment:
Q  461 ttaggaaagtgatgttggaggatgttggtggataa 495  Q
    ||||||||||| |||||||||||||||||||||||    
T  14976179 ttaggaaagtggtgttggaggatgttggtggataa 14976213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 295
Target Start/End: Complemental strand, 39298422 - 39298388
Alignment:
Q  261 tctcttctggtctactttatttccttcttcaaggc 295  Q
    ||||||||| |||||||||||||||||||||||||    
T  39298422 tctcttctgatctactttatttccttcttcaaggc 39298388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 461 - 497
Target Start/End: Complemental strand, 19580012 - 19579976
Alignment:
Q  461 ttaggaaagtgatgttggaggatgttggtggataaag 497  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  19580012 ttaggaaaatgatgttggaggatgttggtggacaaag 19579976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 38617289 - 38617329
Alignment:
Q  218 gagattgccatttactcaccaaatggagaggatctggactc 258  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  38617289 gagatggccatttactctccaaatggagaggatctgaactc 38617329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 40805974 - 40805934
Alignment:
Q  218 gagattgccatttactcaccaaatggagaggatctggactc 258  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  40805974 gagatggccatttactctccaaatggagaggatctgaactc 40805934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 379 - 534
Target Start/End: Original strand, 43284754 - 43284909
Alignment:
Q  379 gattgattgcgatactatttgtttggataaggagttttatggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttgg 478  Q
    ||||||||| |||| ||||||||||||||| ||| |||  |||||| | ||||||||| ||||||||||||||||| || ||||||| || || |||| |    
T  43284754 gattgattg-gatattatttgtttggataaagaggtttgaggtttgggagttaggagattgagagagtttaatattgctattttagggaaatggtgttag 43284852  T
Q  479 aggatgttggtggataaag-ggaggtgtggtataaggtattgagggtgaaatgtggt 534  Q
    ||||||||  ||||||||| ||   ||||||||||||| |||| || ||||| ||||    
T  43284853 aggatgttaatggataaagagggattgtggtataaggttttgaaggagaaatatggt 43284909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 43754610 - 43754675
Alignment:
Q  447 ttaatatttctcttttaggaaagtgatgttggaggatgttggtggataaagggaggtgtggtataa 512  Q
    |||||||  |||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||    
T  43754610 ttaatatcactcttttagggaagtgatgttggaggatgttggtggacaaagggggttgtggtataa 43754675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 468
Target Start/End: Original strand, 25145369 - 25145444
Alignment:
Q  393 ctatttgtttggataaggagttttatggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaa 468  Q
    ||||||||||||  ||| ||| |  ||||||| |||||||||||||||| ||||| ||| || |||||||||||||    
T  25145369 ctatttgtttggcgaagaagtatggtggtttgggggttaggagaatgagggagttaaattttgctcttttaggaaa 25145444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 592
Target Start/End: Complemental strand, 46632614 - 46632540
Alignment:
Q  517 ttgagggtgaaatgtggtcagaaggggggcacttgaaggagggggtagggatagttttgtttggtggaaggagttg 592  Q
    ||||||||||||| |||| || |||||| | ||||||||||||||||| ||| | | ||| |||||||||||||||    
T  46632614 ttgagggtgaaatatggtgaggaggggg-cgcttgaaggagggggtagagatgggtctgtgtggtggaaggagttg 46632540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 495
Target Start/End: Complemental strand, 35273763 - 35273709
Alignment:
Q  441 gagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggataa 495  Q
    ||||||||||| ||||||| ||||| ||||| ||||||| ||||||||| |||||    
T  35273763 gagagtttaatttttctctgttagggaagtggtgttggaagatgttggttgataa 35273709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 492
Target Start/End: Original strand, 1709771 - 1709868
Alignment:
Q  395 atttgtttggataaggagttttatggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtgga 492  Q
    |||||| ||||||||||| ||  |||||| |  || |||| ||| ||||||||||||||  || | ||||| || || ||||||||||||||||||||    
T  1709771 atttgtgtggataaggaggttggtggtttaaaagtaaggaaaattagagagtttaatatagctatcttagggaactggtgttggaggatgttggtgga 1709868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 9510431 - 9510383
Alignment:
Q  438 tgagagagtttaatatttctcttttaggaaagtgatgttggaggatgtt 486  Q
    |||| ||||||||||| ||| | ||||||||||| ||||||||||||||    
T  9510431 tgagggagtttaatatatctatgttaggaaagtggtgttggaggatgtt 9510383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 9518406 - 9518358
Alignment:
Q  438 tgagagagtttaatatttctcttttaggaaagtgatgttggaggatgtt 486  Q
    |||| ||||||||||| ||| | ||||||||||| ||||||||||||||    
T  9518406 tgagggagtttaatatatctatgttaggaaagtggtgttggaggatgtt 9518358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 43284636 - 43284708
Alignment:
Q  261 tctcttctggtctactttatttccttcttcaaggctcctatgtgtatcacttcttctctagaacctttattta 333  Q
    |||||| ||||||||||| ||||||| ||||||||||  |  ||||||| || ||| |||||| |||||||||    
T  43284636 tctcttttggtctactttctttcctttttcaaggctctcacatgtatcattttttcactagaatctttattta 43284708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 43754445 - 43754505
Alignment:
Q  276 tttatttccttcttcaaggctcctatgtgtatcacttcttctctagaacctttatttaatc 336  Q
    ||||||||| ||||||||||| | |  ||||| | ||||||||||||| ||||||||||||    
T  43754445 tttatttccctcttcaaggcttccacatgtattatttcttctctagaatctttatttaatc 43754505  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 378 - 494
Target Start/End: Complemental strand, 37040377 - 37040262
Alignment:
Q  378 agattgattgcgatactatttgtttggataaggagttttatggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttg 477  Q
    |||||||||| |||||||||||| || || | |||||| | |||||| |||| |  |||||||  ||||||||||||  ||||||||||||||| |||||    
T  37040377 agattgattgagatactatttgtctgaatcacgagtttgaaggtttg-gggtcaaaagaatgaatgagtttaatattgttcttttaggaaagtggtgttg 37040279  T
Q  478 gaggatgttggtggata 494  Q
    ||||| |||||||||||    
T  37040278 gaggacgttggtggata 37040262  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 494
Target Start/End: Original strand, 37165590 - 37165638
Alignment:
Q  446 tttaatatttctcttttaggaaagtgatgttggaggatgttggtggata 494  Q
    ||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  37165590 tttaatattgctctattaggaaagtgatgttggaggatgttagtggata 37165638  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 497
Target Start/End: Complemental strand, 23448066 - 23447988
Alignment:
Q  419 ggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggataaag 497  Q
    |||||| ||||||||||| ||||| |||||||| ||||| | || || ||||| |||||||||||||||| ||| ||||    
T  23448066 ggtttgggggttaggagattgagatagtttaatttttctttgttggggaagtggtgttggaggatgttggaggagaaag 23447988  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 13447696 - 13447659
Alignment:
Q  261 tctcttctggtctactttatttccttcttcaaggctcc 298  Q
    |||||||||||||||||| |||||||||||||||||||    
T  13447696 tctcttctggtctactttctttccttcttcaaggctcc 13447659  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 25320488 - 25320431
Alignment:
Q  440 agagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggataaag 497  Q
    |||||||||||| ||||| | || ||||| || |||||||||||||||||||| ||||    
T  25320488 agagagtttaatttttctttgttgggaaaatggtgttggaggatgttggtggacaaag 25320431  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 443 - 495
Target Start/End: Complemental strand, 15014166 - 15014114
Alignment:
Q  443 gagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggataa 495  Q
    ||||||||||||||||| ||||| ||||| |||||||| ||||| || |||||    
T  15014166 gagtttaatatttctctgttagggaagtggtgttggagaatgttagtagataa 15014114  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 426 - 494
Target Start/End: Complemental strand, 24794437 - 24794369
Alignment:
Q  426 gggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggata 494  Q
    ||||||||||| |||| ||||||||| || || | ||||| || || ||||||||||||||||| ||||    
T  24794437 gggttaggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagata 24794369  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 33520903 - 33520943
Alignment:
Q  213 aaattgagattgccatttactcaccaaatggagaggatctg 253  Q
    |||||| ||| ||||||| ||||||||||||||||||||||    
T  33520903 aaattgtgatggccatttcctcaccaaatggagaggatctg 33520943  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 494
Target Start/End: Original strand, 16559111 - 16559187
Alignment:
Q  418 tggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggata 494  Q
    ||||||| |||| |||||||| ||||| ||||||| | |||| ||||||||||| ||||||||| ||||||| ||||    
T  16559111 tggtttgggggtaaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttggtagata 16559187  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 494
Target Start/End: Complemental strand, 16606551 - 16606475
Alignment:
Q  418 tggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggata 494  Q
    ||||||| |||| |||||||| ||||| ||||||| | |||| ||||||||||| ||||||||| ||||||| ||||    
T  16606551 tggtttgggggtaaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttggtagata 16606475  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 17195346 - 17195272
Alignment:
Q  261 tctcttctggtctactttatttccttcttcaaggctcctatgtgtatcacttcttctctagaacctttatttaat 335  Q
    ||||||| |||||||||| ||||||||||||| ||||||    |||||| ||||||| | ||| |||||||||||    
T  17195346 tctcttccggtctactttctttccttcttcaaagctcctgcaggtatcatttcttctattgaatctttatttaat 17195272  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 499
Target Start/End: Original strand, 32815775 - 32815837
Alignment:
Q  437 atgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggataaaggg 499  Q
    ||||| |||||||||||| ||||||||| ||| || |||||||||||| ||| ||||| ||||    
T  32815775 atgagggagtttaatattgctcttttagaaaaatggtgttggaggatgatggcggatagaggg 32815837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 18342282 - 18342315
Alignment:
Q  265 ttctggtctactttatttccttcttcaaggctcc 298  Q
    ||||||| ||||||||||||||||||||||||||    
T  18342282 ttctggtttactttatttccttcttcaaggctcc 18342315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 1396350 - 1396386
Alignment:
Q  261 tctcttctggtctactttatttccttcttcaaggctc 297  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  1396350 tctcttctggtctattttctttccttcttcaaggctc 1396386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 499
Target Start/End: Original strand, 2678819 - 2678883
Alignment:
Q  435 gaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggataaaggg 499  Q
    ||||||| ||||||||| ||||| | |||||||| || |||| || |||||||||||||| ||||    
T  2678819 gaatgagggagtttaatttttctttgttaggaaaatggtgtttgacgatgttggtggatagaggg 2678883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 9095768 - 9095720
Alignment:
Q  390 atactatttgtttggataaggagttttatggtttgagggttaggagaat 438  Q
    ||||||||||||||||||| ||| ||  |||||||||||| ||||||||    
T  9095768 atactatttgtttggataatgaggttggtggtttgagggtgaggagaat 9095720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 668
Target Start/End: Complemental strand, 10167747 - 10167623
Alignment:
Q  545 gcacttgaaggaggg-ggtagggatagttttgtttggtggaaggagttgatgtggatcagtaatgatattgggttctgggagggaagttggtttgaacgg 643  Q
    |||||||||||| || ||||| |||  || |||||||||||||||||||  |||||   |||||| ||||| |||| | ||  |||||| |||||||  |    
T  10167747 gcacttgaaggaaggaggtagagatgattatgtttggtggaaggagttggcgtggactcgtaatggtattgagttcggagattgaagttagtttgaagag 10167648  T
Q  644 aaattaaggagggtggtgggtgatg 668  Q
    || ||||||||||||||||||||||    
T  10167647 aatttaaggagggtggtgggtgatg 10167623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 486
Target Start/End: Complemental strand, 12832581 - 12832513
Alignment:
Q  418 tggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgtt 486  Q
    ||||||| |||| ||||| || ||||||||||||||  |||||||||| ||||| || |||||||||||    
T  12832581 tggtttgggggtaaggagtattagagagtttaatatcgctcttttagggaagtggtgctggaggatgtt 12832513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 486
Target Start/End: Complemental strand, 12864556 - 12864488
Alignment:
Q  418 tggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgtt 486  Q
    ||||||| |||| ||||| || ||||||||||||||  |||||||||| ||||| || |||||||||||    
T  12864556 tggtttgggggtaaggagtattagagagtttaatatcgctcttttagggaagtggtgctggaggatgtt 12864488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 41663303 - 41663343
Alignment:
Q  218 gagattgccatttactcaccaaatggagaggatctggactc 258  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  41663303 gagatggccatttactctccaaatggagaggatctgaactc 41663343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 20509421 - 20509483
Alignment:
Q  426 gggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttgg 488  Q
    |||| ||||| || ||||||||||||||  |||||||||| ||||| ||||||||||||||||    
T  20509421 gggtaaggagtattagagagtttaatatagctcttttagggaagtggtgttggaggatgttgg 20509483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 16698726 - 16698763
Alignment:
Q  261 tctcttctggtctactttatttccttcttcaaggctcc 298  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  16698726 tctcttctggtctactttctttccttcttcatggctcc 16698763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 495
Target Start/End: Original strand, 26892200 - 26892249
Alignment:
Q  446 tttaatatttctcttttaggaaagtgatgttggaggatgttggtggataa 495  Q
    |||||| | ||||||||||| ||||| ||||||||| |||||||||||||    
T  26892200 tttaatttgtctcttttaggtaagtggtgttggaggttgttggtggataa 26892249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 426 - 494
Target Start/End: Original strand, 42952954 - 42953022
Alignment:
Q  426 gggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggata 494  Q
    ||||||||||| |||| ||||||||| || || | ||||| || || ||||||||||||||||| ||||    
T  42952954 gggttaggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagata 42953022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 300
Target Start/End: Original strand, 12249436 - 12249466
Alignment:
Q  270 gtctactttatttccttcttcaaggctccta 300  Q
    |||||||||||||||||||||||||||||||    
T  12249436 gtctactttatttccttcttcaaggctccta 12249466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 499
Target Start/End: Original strand, 28575925 - 28575983
Alignment:
Q  441 gagagtttaatatttctcttttaggaaagtgatgttggaggatgttggtggataaaggg 499  Q
    |||||||||||||  |||| ||| |||| ||||||||||||||||| ||||||| ||||    
T  28575925 gagagtttaatatggctctattaagaaaatgatgttggaggatgttagtggatagaggg 28575983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 487
Target Start/End: Complemental strand, 2540653 - 2540584
Alignment:
Q  418 tggtttgagggttaggagaatgagagagtttaatatttctcttttaggaaagtgatgttggaggatgttg 487  Q
    ||||||| || | |||||||| ||||| ||||||| | |||| ||||||||||| ||||||||| |||||    
T  2540653 tggtttggggataaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttg 2540584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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