View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_high_5 (Length: 650)
Name: NF5585_high_5
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 280 - 634
Target Start/End: Complemental strand, 22904384 - 22904034
Alignment:
| Q |
280 |
catcattttggtcctaaatgaataatggcgctgtcactataaaataatcataaatgtataaaaaattaccaatacatcacttagtttgtatcctaattct |
379 |
Q |
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| T |
22904384 |
catcattttggtcctaaatgagtaatggcgctgtcactataaaataatcataaatgaataaaaaattaccaatacatcacttagtttgtatcctaattct |
22904285 |
T |
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| Q |
380 |
agtgatcaaactaattaaccaaatacacattcgaaaatcaaactaactagaattgaactaactatcaaaagacatatcaaagtattaatcaatctttttn |
479 |
Q |
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| T |
22904284 |
agagatcaaactaattaaccgaatacacattcgataatcaaacta---------------actatcaaaagacatatcaaagtattaatca---ttttaa |
22904203 |
T |
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| Q |
480 |
nnnnnnctcggtatccggcccaaagacc------------cctactgtccactagcagaacccaattgaagccagaac-aagctcggtatggaccgactc |
566 |
Q |
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| T |
22904202 |
aaaaaccttggtatccggcccaaagacccgagagaccaatcctactgtccactagcagaacccaattatagccagaacaaagctccgtatggaccgactc |
22904103 |
T |
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| Q |
567 |
t-aaaagggtaccataagaacgagctcggtaaattacataaaagggtaccttaagaacgagctcatttt |
634 |
Q |
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| T |
22904102 |
taaaaagggtaccataagaacgagctcggtaaattacataaaagggtaccttaagaacgagctcatttt |
22904034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 22904638 - 22904440
Alignment:
| Q |
26 |
tgaatcaaatcatatactaaagaaacctcgaaaatcaagaaaataaaaaagagacaagaaactttacagttcagctgaaatgtattcaattctcttgcgg |
125 |
Q |
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||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
22904638 |
tgaattaaatcaaatactaaagaaacctccaaaatcaagaaaataaaaaagagacaagaaaatttacagttcagctgaaatgtattcaattcttttgcgg |
22904539 |
T |
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| Q |
126 |
acatttgcattggcctcagccaaatcttgcttaacaagtacaggtccaatcaacttgtaaacatttgcgtcttcgttcaataaatccaactcctattgt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22904538 |
acatttgcattggcctcagccaaatcttgcttaacaagtacaggtccaatcaacttgtaaacatttgcgtcttcgttcaataaatccaactcctattgt |
22904440 |
T |
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