View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_high_6 (Length: 622)
Name: NF5585_high_6
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 46757595 - 46757227
Alignment:
| Q |
1 |
tacaaaatggtcccctttgcttcaatagaacattatatgtcttgaaggcactataactattgcttgctttaaatccttcaggtaacagaaatcttactcc |
100 |
Q |
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| T |
46757595 |
tacaaaatggtcccctttgcttcaatagaacattatatgtcttgaaggcactataactattgcttgctttaaatccttcaggtaacagaaatcttactcc |
46757496 |
T |
|
| Q |
101 |
tctcctctgcatggccctgcaaaacaggtctatataataaataaatacaaagaacctaccagggaggcagctattttccactcttcaatatatcatttta |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46757495 |
tctcctctgcatggccctgcaaaacaggactatataataaataaatacaaagaacctaccagggaggcagctattttccactcttcaatatatcatttta |
46757396 |
T |
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| Q |
201 |
aatacctcatattgtcaaaaatgtccttttccttattattcaccatgttttacgctacttattttcttctttcccatctgttgtttacatgtaactacta |
300 |
Q |
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| T |
46757395 |
aatacctcatattgtcaaaaatgtccttttccttattattcaccatgttttacgctacttattttcttctttcccatctgttgtttacatctaactacta |
46757296 |
T |
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| Q |
301 |
caaataataattggttcnnnnnnnnnnnnnctaatacaaataatttgaatttcttattgacaattccttcca |
372 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46757295 |
caaa---taattggttcaaaaacaaaaaaactaatacaaataatttgaatttcttattgacaaatccttcca |
46757227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 412 - 617
Target Start/End: Complemental strand, 46757187 - 46756982
Alignment:
| Q |
412 |
atatatcaaatattgtttcggaccagatggaaacccaatacataatgaattttgcctagaaagttacacgcttagacgcttcattgatgtcctagatact |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
46757187 |
atatatcaaatattgtttcggaccagatggaaacccaatacataatgaattttgcctagaaagttacacacttagacgcttcattgacgtcctagatact |
46757088 |
T |
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| Q |
512 |
aacttaccttcttagcaatcaatcacagtattactaacatcacacagcgattcacgaattatgttgacaatctctcaatgaccttaatggaatttcctat |
611 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
46757087 |
aacttaccttcttagcaatcaatcacagtattattaacatcacacatcgattcacgaattatgttgacaatctctcaatgactttaatggaatttcctgt |
46756988 |
T |
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| Q |
612 |
gattct |
617 |
Q |
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|||||| |
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| T |
46756987 |
gattct |
46756982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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