View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_high_7 (Length: 562)
Name: NF5585_high_7
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 231 - 546
Target Start/End: Complemental strand, 7461333 - 7461014
Alignment:
| Q |
231 |
gtatctagttgcaataataaattaaataagaagaggaagaaagag----accttggtttcaaggagacacttctcaagaatggtggattcatgaannnnn |
326 |
Q |
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| T |
7461333 |
gtatctagttgcaataataaattaaataagaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgatttttt |
7461234 |
T |
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| Q |
327 |
nnaagacttaagtacccttcttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctcca |
426 |
Q |
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| T |
7461233 |
ttaagactgaagtactcttcttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctcca |
7461134 |
T |
|
| Q |
427 |
ttgcaagcctatccttcttctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgtt |
526 |
Q |
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| T |
7461133 |
ttgcaagcctatccttcttctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgtt |
7461034 |
T |
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| Q |
527 |
catgtcgttggcactgtttt |
546 |
Q |
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| T |
7461033 |
catgtcgttagcactgtttt |
7461014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 250 - 546
Target Start/End: Complemental strand, 7446370 - 7446070
Alignment:
| Q |
250 |
aattaaataagaagaggaagaaagag----accttggtttcaaggagacacttctcaagaatggtggattcatgaannnnnnnaagacttaagtaccctt |
345 |
Q |
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| T |
7446370 |
aattaaataagaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactctt |
7446271 |
T |
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| Q |
346 |
cttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttctt |
445 |
Q |
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| T |
7446270 |
cttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttctt |
7446171 |
T |
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| Q |
446 |
ctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttt |
545 |
Q |
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| T |
7446170 |
ctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttt |
7446071 |
T |
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| Q |
546 |
t |
546 |
Q |
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| T |
7446070 |
t |
7446070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 7461545 - 7461391
Alignment:
| Q |
11 |
cagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatatagtaatataat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7461545 |
cagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaa--------tataat |
7461454 |
T |
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| Q |
111 |
attgttggagaaatgatgattggaaattaaaattttcatgtcaaattataattcaatccactg |
173 |
Q |
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| T |
7461453 |
attgttggagaaatgatgattggaaattaaaattttgatgtcaaattataattcaatccactg |
7461391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 7446557 - 7446468
Alignment:
| Q |
11 |
cagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatata |
100 |
Q |
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| T |
7446557 |
cagagaagaaacatggtaacatgcttgccctaaattgacgttactggtgttgtgttgagacaaataaaaacaaaacactatagtaatata |
7446468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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