View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5585_low_11 (Length: 503)
Name: NF5585_low_11
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Complemental strand, 42609435 - 42608975
Alignment:
| Q |
19 |
aaggtgagtatgttttcacttacattgatgacccttgcagtgctatatatcctctaatgcagaagctgagatatgtactagttgatcatgcattgcaaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42609435 |
aaggtgagtatgttttcacttacattgatgacccttgcagtcctatatatcctctaatgcagaagctgagatatgtactagttgatcatgcattgcaaaa |
42609336 |
T |
|
| Q |
119 |
tggtgataaggaggcaaattcaagcacctcgattttccaaaagattggagcttttgaggaagagcttaaggcccttttgcctaaagaggtggaaaatgct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42609335 |
tggtgataaggaggcaaattcaagcacctcgattttccaaaagattggagcttttgaggaagagcttaaggcccttttgcctaaagaggtggaaaatgct |
42609236 |
T |
|
| Q |
219 |
agggttgaaattgaaaatggaaaccctgcagttcctaatatgatcaaggaatgtagatcatatccattgtacaagttcatgagagaaactttagggacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42609235 |
agggttgaaattgaaaatggaaaccctgcagttcctaatatgatcaaggaatgtagatcatatccattgtacaagttcatgagagaaactttagggacaa |
42609136 |
T |
|
| Q |
319 |
gtttgctgacaggtgagaaaattaggtcacctggtgaggactgtgataaggttttcacagcaatgtgtgatggaaggtttattgatcccatgttggattg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42609135 |
gtttgctgacaggtgagaaaattaggtcacctggtgaggactgtgataaggttttcacagcaatgtgtgatggaaggtttattgatcccatgttggattg |
42609036 |
T |
|
| Q |
419 |
tctaaaggagtggaatggtgttcctctacctatctgctaggattgtgctactctaatgtaa |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42609035 |
tctaaaggagtggaatggtgttcctctacctatctgctaggattgtgctactctaatgtaa |
42608975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University