View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_low_12 (Length: 496)
Name: NF5585_low_12
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_low_12 |
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| [»] scaffold0755 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 489
Target Start/End: Original strand, 1556980 - 1557443
Alignment:
| Q |
17 |
atgtatttcagaattgtgaatttcacaaaaagaacaatggatatgtacatttttatgaacaataaggttgtttttaagattgggataaaagatcttatgc |
116 |
Q |
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| T |
1556980 |
atgtatttcagaattgtgaatttcccaaaaagaacaatggatatgtacatttttatgaacaataaggttgtttttaagattgggataaaagatcttatgc |
1557079 |
T |
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| Q |
117 |
tcaatgaaaaacaagatgcgctcgaaagatttccagatggttcttactcgaaaaggatttacgtgctctaattgttgtgatacggtgtaagtctttatac |
216 |
Q |
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| T |
1557080 |
tcaatgaaaaacaaga---------aagatttccagatggttcttactcgaaaaggatttacgtgctataattgttgtgatacggtgtaagtctttatac |
1557170 |
T |
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| Q |
217 |
tttatctctcaggaccggttttaactcgttggactttgttttcagtctgttgtcatattttaatgcttccaaatcacaacatcataaggtgctgcaagga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1557171 |
tttatctctcaggaccggttttaactcgttggactttgttttcagtctgttgtcatattttaatgctgccaaatcacaacatcataaggtgctgcaagga |
1557270 |
T |
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| Q |
317 |
tcccatgataaattgaaaacaaacagagaccgcacctggtttgattctgctaagcaaaaacgtcaaatcattgtttccagtctccactcgatcgtcatct |
416 |
Q |
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| T |
1557271 |
tcccatgataacttgaaaacaaacagagaccgcacctggtttgattctgctaagcaaaaacgtcaaatcattgtttccagtctccactcgatcgtcatct |
1557370 |
T |
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| Q |
417 |
cagccttgattctatccgtcaactttgtcggtatctcccnnnnnnnattttacattgtttcggttcttctgtg |
489 |
Q |
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| T |
1557371 |
cagccttgattctatctgtcgactttgtcggtatgcccctttttttattttacattgtttcggttcttctgtg |
1557443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 17687156 - 17687254
Alignment:
| Q |
349 |
cacctggtttgattctgctaagcaaaaacgtcaaatcattgtttccagtctccactcgatcgtcatctcagccttgattctatccgtcaactttgtcgg |
447 |
Q |
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|||| |||||||||||||||||| ||||||||||| || ||||||| ||||| |||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
17687156 |
cacccggtttgattctgctaagccaaaacgtcaaaacagtgtttccggtctctactcgatcatcatctcagccttgattctatcagttgactttgtcgg |
17687254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 324
Target Start/End: Complemental strand, 22005672 - 22005523
Alignment:
| Q |
179 |
gtgctctaattgttgtgatacggtgtaagtctttatactttatctctcaggaccggttttaactcgttggactt--tgttttcagtctgttgtcatattt |
276 |
Q |
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||||||||||||||||||||| | ||||||||||| |||||||| || |||| |||||||||| ||| | || |||||||| | ||| |||||||| |
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| T |
22005672 |
gtgctctaattgttgtgatacaatttaagtctttattatttatctcacatgaccagttttaactcattgcattttctgttttcaatttgtcatcatattt |
22005573 |
T |
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| Q |
277 |
taatgcttccaaatcaca--acatcataaggtgctgcaaggatcccatga |
324 |
Q |
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| T |
22005572 |
tgttgctgccaaatcacatgagatcagaaggtgctgctaggttccaatga |
22005523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 6773280 - 6773213
Alignment:
| Q |
42 |
caaaaagaacaatggatatgtacatttttatgaacaataaggttgtttttaagattgggataaaagat |
109 |
Q |
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| T |
6773280 |
caaagagaacaatggatatgtacctttttatgaacagtaaggttctgtttaagactgtgagaaaagat |
6773213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 3721 - 3785
Alignment:
| Q |
251 |
tttgttttcagtctgttgtcatattttaatgcttccaaatcacaacatcataaggtgctgcaagg |
315 |
Q |
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| T |
3721 |
tttgttttcagtctgtcgtcatattttgctgctgccaaatctcatgatcataaggtgttgcaagg |
3785 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 449
Target Start/End: Original strand, 44546552 - 44546605
Alignment:
| Q |
396 |
gtctccactcgatcgtcatctcagccttgattctatccgtcaactttgtcggta |
449 |
Q |
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| T |
44546552 |
gtctccactccaatgtcgtctcagccttggttctatccgtcaactttgttggta |
44546605 |
T |
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