View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_low_13 (Length: 435)
Name: NF5585_low_13
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 48 - 419
Target Start/End: Complemental strand, 50516714 - 50516343
Alignment:
| Q |
48 |
tgcaattggcaaggagtgcgttcactcttcacacacactctcacattctttgatttgccaatgcannnnnnnncctctctagttgctaagattatgactt |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50516714 |
tgcaattggcaaggagtgcgttcactcttcacacacactctcacattctttgatttgccaatgcattttttttcctctctagttgctaagattatgactt |
50516615 |
T |
|
| Q |
148 |
tacttttgtccatgaggagttgccattacattagtagaggcgtttacgttcacaacttctttcttccctccatgacatcttgtgcatgttgcccaataat |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50516614 |
tacttttgtccatgaggagttgccattacattagtagaggcgtttacgttcacaacttctttcttccctccatgacatcttgtgcatgttgcccaataat |
50516515 |
T |
|
| Q |
248 |
ggttatccatttttagatataataatattgtttggataaacgctactgtcatcgatattttaagtaaatagtacttttaacattactctcattttctatt |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50516514 |
ggttatccatttttagatataataatattgtttggataaacgctactgtcatcgatattttaagtaaatagtacttttaacattactctcattttctatt |
50516415 |
T |
|
| Q |
348 |
gctagtactttcacatttatctggacctacatcctaaactcaaacttctaaatccagagactgggttaaaag |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50516414 |
gctagtactttcacatttatctggacctacatcctaaactcaaacttctaaatccagagactgggttaaaag |
50516343 |
T |
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