View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_low_15 (Length: 374)
Name: NF5585_low_15
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 2718098 - 2717747
Alignment:
| Q |
9 |
taatactgctctgctgaaatccaggcgaggaagatgaagataaactacttgaagagattctcacatattcagtaagtttattttttcttcagcctttact |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2718098 |
taatactgctctgctgaaatccaggcgaggaagatgaagataaactacttgaagagattctcacatattcagtaagtttattttttcttcagcctttact |
2717999 |
T |
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| Q |
109 |
gttagcattctgtcgttttccctcaaaactactatcatgttatacccaatatgcagtatccccccactttgagttccacaacgaaaggttgctgccttgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2717998 |
gttagcattctgtcgttttccctcaaaactactatcatgttatacccaatatgcagtatccccccactttgagttccacaacgaaaggttgctgccttgt |
2717899 |
T |
|
| Q |
209 |
gactcagaagaggtcactggttcaaatctttggaaatagcctctcaatttgcgggggactctcattttgtggtggtaaagttgtgtacatctccctcccc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2717898 |
gactcagaagaggtcactggttcaaatctttggaaatagcctctcaatttgcgggggactctcattttgtggtggtaaagttgtgtacatctccctcccc |
2717799 |
T |
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| Q |
309 |
agattccacctggtgggactgggagccttgtggtgggagccccgtgggatgt |
360 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2717798 |
agattcaacctggtgggactgggagccttgtggtgggagccccgtgggatgt |
2717747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 7321364 - 7321695
Alignment:
| Q |
9 |
taatactgctctgctgaaatccaggcgaggaagatgaagataaactacttgaagagattctcacatattcagtaagtttattttttcttcagcctttact |
108 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7321364 |
taatactgctctgatgaaatccaggtgaggaagatgaagataaactacttgaagagattctcacatattcagtaagtttattttttcttaagcctttact |
7321463 |
T |
|
| Q |
109 |
gttagcattctgtcgttttccctcaaaactactatcatgttatacccaatatgcagtatccccccactttgagttccacaacgaaaggttgctgccttgt |
208 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7321464 |
gttagcattttgtcgttttccctcaaaactactatcatgttatacccaatatgcagtatccccccactttgagttccacaacgaaaggttgctgccttgt |
7321563 |
T |
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| Q |
209 |
gactcagaagaggtcactggttcaaatctttggaaatagcctctcaatttgcgggggactctcattttgtggtggtaaagttgtgtacatctccctcccc |
308 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7321564 |
gactcagaagaggtcactggttcaaatc-ttggaaatagcctctcaatttgcgggggactctcattttgcggtggtaaagttgtgtacatctccctcccc |
7321662 |
T |
|
| Q |
309 |
agattccacctggtgggactgggagccttgtgg |
341 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
7321663 |
agattccacctggtgggactgggagccctgtgg |
7321695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 834003 - 833926
Alignment:
| Q |
9 |
taatactgctctgctgaaatccaggcgaggaagatgaagataaactacttgaagagattctcacatattcagtaagtt |
86 |
Q |
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||||||||||||| ||||||||||| ||||| ||||||| ||||| ||| | |||||||||||||| |||||||||| |
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| T |
834003 |
taatactgctctgatgaaatccaggtgaggagaatgaagagaaactgcttaatgagattctcacatactcagtaagtt |
833926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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