View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_low_2 (Length: 757)
Name: NF5585_low_2
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 25379111 - 25378559
Alignment:
| Q |
1 |
actgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgttttttctaacctatctcatgaaaattcatcatcaccac |
100 |
Q |
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| T |
25379111 |
actgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgttttttctaacctatctcatgaaaattcatcatcaccac |
25379012 |
T |
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| Q |
101 |
ttatatctgaatcttatgatgatgaacttctcttcatgcaacaacttttcaaggtgaataataatgctgaacctgttaacccctactccaagaaaccctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25379011 |
ttatatctgaatcttatgatgatgaacttctcttcatgcagcaacttttcaaggtgaataataatgctgaacctgttaacccctactccaagaaaccctc |
25378912 |
T |
|
| Q |
201 |
ttcaaactcttatccattggattattcttcccaaactaacagtaatcagattctccctgatgttactgattgtggatttgttcattccaatccttccaat |
300 |
Q |
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| T |
25378911 |
ttcaaactcttatccattggattattcttcccaaactaacagtaatcagattctccctgatgttactgattgtggatttgttcattccaatccttccaat |
25378812 |
T |
|
| Q |
301 |
taccctaagccaaattcacaaaacaacatgtacttgagtacttcttcgacacctatgatgaattaccttaattctgaccactaccttcctccaatgctga |
400 |
Q |
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| T |
25378811 |
taccctaagccaaattcacaaaacaacatgtacttgagtacttcttccacacctatgatgaattaccttaattctgaccactaccttcctccaatgctga |
25378712 |
T |
|
| Q |
401 |
atggaattcagaatcagaacaacgttgagttgcatcttgggaatatgaatttttcagaggggaagagagagatggatttgttggagttggtttcttctgc |
500 |
Q |
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| T |
25378711 |
atggaattcagaatcagaacaacgtggagttgcatcttgggaatatgaatttttcagaggggaagagagagatggatttgttggagttggtttcttctgc |
25378612 |
T |
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| Q |
501 |
tcagttttattagtgctgctgctggtgattctaaaatgatgaatctatcattt |
553 |
Q |
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| T |
25378611 |
tcagttttattagtgctgctgctggtgattctaaaatgatgaatctatcattt |
25378559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 598 - 675
Target Start/End: Complemental strand, 25378513 - 25378436
Alignment:
| Q |
598 |
cttccacgtttgataaaccatgcttccactatagcatggtagtatgcatttgacattaatttggattgtttagtcttg |
675 |
Q |
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| T |
25378513 |
cttccacgtttgataaaccatgcttccactatagcatggtagtatgcatttgacattaatttggattgtttagtcttg |
25378436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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