View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_low_28 (Length: 256)
Name: NF5585_low_28
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_low_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 23909283 - 23909534
Alignment:
| Q |
5 |
caatcaaacgaataatatattgtaggaacttaatgaatatatttataataaatatatgacaagagacaaaataaagagaggtcaatctcgtatgttgaaa |
104 |
Q |
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| T |
23909283 |
caatcaaacgaataatatattgtaggaacttaatgaatatatttataataaatatatgacaagagacaaaataaagagaggtcaatctcgtatgttgaaa |
23909382 |
T |
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| Q |
105 |
gatgataccacaagcagcaagactaagggaacccttcgttgcaccatatgttctacacttaattcatctacaagcaagttgactgctataaccaaataaa |
204 |
Q |
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| T |
23909383 |
gatgataccacaagcagcaagactaagggaacccttcgttgcaccatatgttctacatttaattcatctacaagcaagttgactgctataaccaaataaa |
23909482 |
T |
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| Q |
205 |
cttggaatttgtaacacctaaacgtatcgctggaaaattaacaaaaactatt |
256 |
Q |
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| T |
23909483 |
cttggaatttgtaacacctaaacgtatcgctggaaaattaacaaaaattatt |
23909534 |
T |
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