View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5585_low_3 (Length: 755)

Name: NF5585_low_3
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5585_low_3
NF5585_low_3
[»] chr2 (10 HSPs)
chr2 (17-745)||(10546918-10547646)
chr2 (666-745)||(10508971-10509050)
chr2 (660-745)||(10464766-10464851)
chr2 (670-745)||(10476044-10476119)
chr2 (667-745)||(10494363-10494441)
chr2 (666-745)||(7478921-7479000)
chr2 (417-450)||(44460357-44460390)
chr2 (420-450)||(12749993-12750023)
chr2 (309-346)||(10864728-10864765)
chr2 (417-450)||(29324184-29324217)
[»] chr7 (5 HSPs)
chr7 (473-532)||(96784-96843)
chr7 (477-529)||(5363792-5363844)
chr7 (417-457)||(38622874-38622914)
chr7 (419-457)||(40869549-40869587)
chr7 (418-447)||(1109354-1109383)
[»] chr5 (5 HSPs)
chr5 (417-459)||(4787938-4787980)
chr5 (417-455)||(41399567-41399605)
chr5 (418-462)||(10389957-10390001)
chr5 (417-463)||(875722-875767)
chr5 (417-450)||(38346888-38346921)
[»] chr6 (3 HSPs)
chr6 (417-450)||(21869889-21869922)
chr6 (419-460)||(4354335-4354376)
chr6 (417-450)||(31694724-31694757)
[»] chr4 (5 HSPs)
chr4 (418-451)||(2843582-2843615)
chr4 (420-457)||(18968304-18968341)
chr4 (421-457)||(20989522-20989558)
chr4 (417-457)||(34581605-34581645)
chr4 (475-529)||(26275458-26275512)
[»] chr8 (4 HSPs)
chr8 (419-462)||(31809797-31809840)
chr8 (424-463)||(33120549-33120588)
chr8 (481-532)||(34862995-34863046)
chr8 (417-463)||(22807094-22807140)
[»] chr3 (3 HSPs)
chr3 (418-457)||(2101653-2101692)
chr3 (418-455)||(21754265-21754302)
chr3 (479-532)||(34363313-34363366)
[»] scaffold0041 (1 HSPs)
scaffold0041 (419-457)||(96695-96733)
[»] scaffold0913 (1 HSPs)
scaffold0913 (417-450)||(1280-1313)
[»] scaffold0898 (1 HSPs)
scaffold0898 (417-450)||(4288-4321)
[»] chr1 (1 HSPs)
chr1 (417-450)||(15955919-15955952)


Alignment Details
Target: chr2 (Bit Score: 615; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 17 - 745
Target Start/End: Complemental strand, 10547646 - 10546918
Alignment:
Q  17 cactttccacctccgtcacttctctgcggcatgcatcaagcattccaaggagcaacagctacgcaacatttggatttcgggactcgtcgaccctgccaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10547646 cactttccacctccgtcacttctctgcggcatgcatcaagcattccaaggagcaacagctacgcaacatttggatttcgggactcgtcgaccctgccaaa 10547547  T
Q  117 tcacccgtttcagagaggtacatgttatacactggtcagatcgaaaagatggaggaggctagaaataaaattcagaggagagatgcgagacttaggtggg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  10547546 tcacccgtttcagagaggtacatgttatacactggtcagatcgaaaagatggaggaggctagaaataaaattcagagaagagatgcgagactttggtggg 10547447  T
Q  217 atattcatgaagagcaatggctcaattttagttatcgtcggagttccacaagaaaaagttcatatcctactcagatatgtgattctttccctgcagatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10547446 atattcatgaagagcaatggctcaattttagttatcgtcggagttccacaagaaaaagttcatatcctactcagatatgtgattctttccctgcagatgt 10547347  T
Q  317 cactttcttcaactggaaacaccataaggtttcaattttcattttcaacgactcaattcatttttgcattttattatatgataggataccaatccgccat 416  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10547346 tactttcttcaactggaaacaccataaggtttcaattttcattttcaacgactcaattcatttttgcattttattatatgataggataccaatccgctat 10547247  T
Q  417 tgatacactatttagtacaaaatgttgtcaaatatcggctacagtggcagcactattattgcgtagcggaattttaacaattagctattttctgctatct 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10547246 tgatacactatttagtacaaaatgttgtcaaatatcggctacagtggcagcactattattgcgtagcggaatttgaacaattagctattttctgctatct 10547147  T
Q  517 gtgattgacaacattgtgtgcataaaaaagtcaaaaatattcttcttgcttgcatgcattatcgatggaatggtagtaaactgatatgatatattcttga 616  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10547146 gtgattgacaacat--tgtgcataaaaaagtcaaaattattcttcttgctttcatgctttatcgatggaatggtagtaaactgatatgatatattcttga 10547049  T
Q  617 agcattcagttaatg-nnnnnnnnnnnnnnnactttctttaaaattgtcggtcc-ttgcagatgagtgtaattgacacacctgattgtgttgacttcact 714  Q
    |||||||||||||||                |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  10547048 agcattcagttaatgtttttttatattttttactttctttaaaattgtccgtccgttgcagatgagcgtaattgacacacctgattgtgttgacttcact 10546949  T
Q  715 tctgaggttgataatgctctgcgtgcctttg 745  Q
    |||||||||||||||||||| ||||||||||    
T  10546948 tctgaggttgataatgctctacgtgcctttg 10546918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 666 - 745
Target Start/End: Complemental strand, 10509050 - 10508971
Alignment:
Q  666 gtccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 745  Q
    ||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||    
T  10509050 gtccttgcagatgagcgtaattgacacacctgcttgtgttgatttcactcctgaggttgacaatgctctgcgtgcctttg 10508971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 660 - 745
Target Start/End: Complemental strand, 10464851 - 10464766
Alignment:
Q  660 ttgtcggtccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 745  Q
    ||||| |||||||||||||| |||||||||||||||||||  |||||| |||||| |||||||| | ||||| |||||||||||||    
T  10464851 ttgtctgtccttgcagatgactgtaattgacacacctgatcatgttgatttcactcctgaggttcagaatgcgctgcgtgcctttg 10464766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 670 - 745
Target Start/End: Complemental strand, 10476119 - 10476044
Alignment:
Q  670 ttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 745  Q
    ||||||||||||||  ||||||||||||||  |||||| |||||| |||||||| | |||||||||||||||||||    
T  10476119 ttgcagatgagtgtgcttgacacacctgataatgttgatttcactgctgaggttcagaatgctctgcgtgcctttg 10476044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 667 - 745
Target Start/End: Complemental strand, 10494441 - 10494363
Alignment:
Q  667 tccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 745  Q
    |||||||||||||  || ||||||||||||| | ||||||| |||||| |||||||| | ||||||||| |||||||||    
T  10494441 tccttgcagatgaccgtgattgacacacctgctcgtgttgatttcactactgaggttaagaatgctctgtgtgcctttg 10494363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 666 - 745
Target Start/End: Original strand, 7478921 - 7479000
Alignment:
Q  666 gtccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 745  Q
    |||||||||||||| ||| ||||||||||||| |  |||||| |||||| |||||||| | | |||||||| ||||||||    
T  7478921 gtccttgcagatgactgtgattgacacacctgttcatgttgatttcactgctgaggttaagagtgctctgcctgcctttg 7479000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 450
Target Start/End: Original strand, 44460357 - 44460390
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaata 450  Q
    ||||||||||||||||||||||||||||||||||    
T  44460357 tgatacactatttagtacaaaatgttgtcaaata 44460390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 420 - 450
Target Start/End: Original strand, 12749993 - 12750023
Alignment:
Q  420 tacactatttagtacaaaatgttgtcaaata 450  Q
    |||||||||||||||||||||||||||||||    
T  12749993 tacactatttagtacaaaatgttgtcaaata 12750023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 10864765 - 10864728
Alignment:
Q  309 gcagatgtcactttcttcaactggaaacaccataaggt 346  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  10864765 gcaggtgtcactttctttaactggaaacaccataaggt 10864728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 450
Target Start/End: Original strand, 29324184 - 29324217
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaata 450  Q
    ||||||||||||||||||||||| ||||||||||    
T  29324184 tgatacactatttagtacaaaatattgtcaaata 29324217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 473 - 532
Target Start/End: Complemental strand, 96843 - 96784
Alignment:
Q  473 tattgcgtagcggaattttaacaattagctattttctgctatctgtgattgacaacattg 532  Q
    |||||||||||||||||||||||||  ||||||||||||||||  |||||||||| ||||    
T  96843 tattgcgtagcggaattttaacaatacgctattttctgctatccttgattgacaatattg 96784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 529
Target Start/End: Original strand, 5363792 - 5363844
Alignment:
Q  477 gcgtagcggaattttaacaattagctattttctgctatctgtgattgacaaca 529  Q
    |||||| ||||||||||||| |||||||||||||||| |||| |||| |||||    
T  5363792 gcgtagtggaattttaacaaatagctattttctgctaactgtaattgtcaaca 5363844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 38622914 - 38622874
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaatatcggcta 457  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  38622914 tgatacactatttagcacaaaatgttgtcaaatagcggcta 38622874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 457
Target Start/End: Complemental strand, 40869587 - 40869549
Alignment:
Q  419 atacactatttagtacaaaatgttgtcaaatatcggcta 457  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  40869587 atacagtatttagtacaaaatgttgtcaaatagcggcta 40869549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 1109383 - 1109354
Alignment:
Q  418 gatacactatttagtacaaaatgttgtcaa 447  Q
    ||||||||||||||||||||||||||||||    
T  1109383 gatacactatttagtacaaaatgttgtcaa 1109354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 4787938 - 4787980
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaatatcggctaca 459  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  4787938 tgatacactatttagtacaaaatgttgtcaaatagtggctaca 4787980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 455
Target Start/End: Complemental strand, 41399605 - 41399567
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaatatcggc 455  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  41399605 tgatacactatttagtacaaaatgttgtcaaatagcggc 41399567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 10390001 - 10389957
Alignment:
Q  418 gatacactatttagtacaaaatgttgtcaaatatcggctacagtg 462  Q
    ||||||||||||| |||||||||||||||| ||||||||| ||||    
T  10390001 gatacactatttattacaaaatgttgtcaagtatcggctatagtg 10389957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 875722 - 875767
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaatatcggctacagtgg 463  Q
    |||||||||||||||| ||||||||||||||||| |||||| |||||    
T  875722 tgatacactatttagt-caaaatgttgtcaaatagcggctatagtgg 875767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 450
Target Start/End: Original strand, 38346888 - 38346921
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaata 450  Q
    |||||||||||||| |||||||||||||||||||    
T  38346888 tgatacactatttactacaaaatgttgtcaaata 38346921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 450
Target Start/End: Original strand, 21869889 - 21869922
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaata 450  Q
    ||||||||||||||||||||||||||||||||||    
T  21869889 tgatacactatttagtacaaaatgttgtcaaata 21869922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 460
Target Start/End: Complemental strand, 4354376 - 4354335
Alignment:
Q  419 atacactatttagtacaaaatgttgtcaaatatcggctacag 460  Q
    |||||||||||||||||||||||||| ||||| | |||||||    
T  4354376 atacactatttagtacaaaatgttgtaaaatagcagctacag 4354335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 450
Target Start/End: Complemental strand, 31694757 - 31694724
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaata 450  Q
    |||||||||||||||||||||||||| |||||||    
T  31694757 tgatacactatttagtacaaaatgttttcaaata 31694724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 451
Target Start/End: Complemental strand, 2843615 - 2843582
Alignment:
Q  418 gatacactatttagtacaaaatgttgtcaaatat 451  Q
    ||||||||||||||||||||||||||||||||||    
T  2843615 gatacactatttagtacaaaatgttgtcaaatat 2843582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 18968304 - 18968341
Alignment:
Q  420 tacactatttagtacaaaatgttgtcaaatatcggcta 457  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  18968304 tacactatttagtacaaaatgttgtcaaatagcggcta 18968341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 20989522 - 20989558
Alignment:
Q  421 acactatttagtacaaaatgttgtcaaatatcggcta 457  Q
    |||||||||||||||||||||||||||||| ||||||    
T  20989522 acactatttagtacaaaatgttgtcaaatagcggcta 20989558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 34581605 - 34581645
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaatatcggcta 457  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  34581605 tgatacgctatttagtacaaaatgttgtcaaatagcggcta 34581645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 475 - 529
Target Start/End: Complemental strand, 26275512 - 26275458
Alignment:
Q  475 ttgcgtagcggaattttaacaattagctattttctgctatctgtgattgacaaca 529  Q
    |||| ||||||||||| ||||| | |||||||||||| |||||| ||||||||||    
T  26275512 ttgcatagcggaatttgaacaaatcgctattttctgcgatctgtaattgacaaca 26275458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 462
Target Start/End: Original strand, 31809797 - 31809840
Alignment:
Q  419 atacactatttagtacaaaatgttgtcaaatatcggctacagtg 462  Q
    |||| ||||||||||||||||||||||||||| | |||||||||    
T  31809797 atacgctatttagtacaaaatgttgtcaaataactgctacagtg 31809840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 463
Target Start/End: Complemental strand, 33120588 - 33120549
Alignment:
Q  424 ctatttagtacaaaatgttgtcaaatatcggctacagtgg 463  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  33120588 ctatttagtacaaaatgttgtcaaatagcggcttcagtgg 33120549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 532
Target Start/End: Original strand, 34862995 - 34863046
Alignment:
Q  481 agcggaattttaacaattagctattttctgctatctgtgattgacaacattg 532  Q
    |||||||||||||||||  ||| ||||||||||||  |||||||||||||||    
T  34862995 agcggaattttaacaatctgctgttttctgctatccttgattgacaacattg 34863046  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 22807140 - 22807094
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaatatcggctacagtgg 463  Q
    |||||||||||||||||| |||||||||||||||  |||||| ||||    
T  22807140 tgatacactatttagtacgaaatgttgtcaaataatggctactgtgg 22807094  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 457
Target Start/End: Complemental strand, 2101692 - 2101653
Alignment:
Q  418 gatacactatttagtacaaaatgttgtcaaatatcggcta 457  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  2101692 gatacactatttagtacaaagtgttgtcaaataacggcta 2101653  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 21754265 - 21754302
Alignment:
Q  418 gatacactatttagtacaaaatgttgtcaaatatcggc 455  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  21754265 gatacactatttagtacaaattgttgtcaaatagcggc 21754302  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 532
Target Start/End: Original strand, 34363313 - 34363366
Alignment:
Q  479 gtagcggaattttaacaattagctattttctgctatctgtgattgacaacattg 532  Q
    ||||| || ||||||||||  ||||||||| ||||||||||||||||| |||||    
T  34363313 gtagcagatttttaacaatctgctattttccgctatctgtgattgacatcattg 34363366  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 457
Target Start/End: Original strand, 96695 - 96733
Alignment:
Q  419 atacactatttagtacaaaatgttgtcaaatatcggcta 457  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  96695 atacagtatttagtacaaaatgttgtcaaatagcggcta 96733  T

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Target: scaffold0913 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 450
Target Start/End: Complemental strand, 1313 - 1280
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaata 450  Q
    ||||||||||||||||||||| ||||||||||||    
T  1313 tgatacactatttagtacaaagtgttgtcaaata 1280  T

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Target: scaffold0898 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 450
Target Start/End: Original strand, 4288 - 4321
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaata 450  Q
    ||||||||||||||||||||| ||||||||||||    
T  4288 tgatacactatttagtacaaagtgttgtcaaata 4321  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 450
Target Start/End: Original strand, 15955919 - 15955952
Alignment:
Q  417 tgatacactatttagtacaaaatgttgtcaaata 450  Q
    ||||||||||||||| ||||||||||||||||||    
T  15955919 tgatacactatttaggacaaaatgttgtcaaata 15955952  T

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