View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_low_33 (Length: 239)
Name: NF5585_low_33
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10239210 - 10238989
Alignment:
| Q |
1 |
ttaaacacaatgacgttccagttttctccatgaaaagaccttcttttcttcatgatttcgcaattacnnnnnnntacgctgtgttcgctgatatacagct |
100 |
Q |
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| T |
10239210 |
ttaaacacaatgacgttccagttttctccatgaaaagaccttcttttcttcatgatttcgcaattacaaaaaaatacgctttgttcgctgatatacagct |
10239111 |
T |
|
| Q |
101 |
tgaaattaatcctcttgacatgattttcggtggttcccccgtaaggtcggatccatcgaaggttccaaggattggaattctacctcgttatgctgataac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
10239110 |
tgaaattaatcctcttgacatgattttcggtggttccccggtaaggtccgatccatcgaaagttccaaggatcggaattctacctcgttatgctgataac |
10239011 |
T |
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| Q |
201 |
gagtcgaagatgaagtggtttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
10239010 |
gagtcgaagatgaagtggtttg |
10238989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10230430 - 10230209
Alignment:
| Q |
1 |
ttaaacacaatgacgttccagttttctccatgaaaagaccttcttttcttcatgatttcgcaattacnnnnnnntacgctgtgttcgctgatatacagct |
100 |
Q |
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|
||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| |
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| T |
10230430 |
ttaaacataacgacgttccagtattctccatgaaaagaccttcgtttcttcatgatttcgccattactaaaaaatatgctgtgttcgctgatatacagct |
10230331 |
T |
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| Q |
101 |
tgaaattaatcctcttgacatgattttcggtggttcccccgtaaggtcggatccatcgaaggttccaaggattggaattctacctcgttatgctgataac |
200 |
Q |
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|||||| |||||||||| |||||||||||||||||| || || || ||||||||||| || ||| ||||||| ||||||||||||||||||||| || || |
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| T |
10230330 |
tgaaatgaatcctcttggcatgattttcggtggttctccggtgagatcggatccatctaaagtttcaaggatcggaattctacctcgttatgctaatgac |
10230231 |
T |
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| Q |
201 |
gagtcgaagatgaagtggtttg |
222 |
Q |
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||||| |||||||||||||||| |
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| T |
10230230 |
gagtccaagatgaagtggtttg |
10230209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10255395 - 10255616
Alignment:
| Q |
1 |
ttaaacacaatgacgttccagttttctccatgaaaagaccttcttttcttcatgatttcgcaattacnnnnnnntacgctgtgttcgctgatatacagct |
100 |
Q |
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||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| | ||||| ||||| |
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| T |
10255395 |
ttaaacataacgacgttccggttttctccatgacaagaccttcttttcttcatgatttcgccattactaaaaaatacgctgtgtttacggatattcagct |
10255494 |
T |
|
| Q |
101 |
tgaaattaatcctcttgacatgattttcggtggttcccccgtaaggtcggatccatcgaaggttccaaggattggaattctacctcgttatgctgataac |
200 |
Q |
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|| ||| ||||||||||||||||||| ||||||||| || ||| | || ||||| || |||||| ||||||| ||||||||||| | |||||| | | |
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| T |
10255495 |
tggaatgaatcctcttgacatgatttccggtggttctccggtaggttccgatccttcaaaggtttcaaggatcggaattctaccgagatatgctagtgat |
10255594 |
T |
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| Q |
201 |
gagtcgaagatgaagtggtttg |
222 |
Q |
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|||||||||||||| ||||||| |
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| T |
10255595 |
gagtcgaagatgaaatggtttg |
10255616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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